Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
- plasma membrane 1
- endoplasmic reticulum 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24310.1 | EES02290 | AT3G16310.1 | 21798944 |
| AT4G24310.1 | EES19830 | AT3G16310.1 | 21798944 |
| AT4G24310.1 | EES12559 | AT3G60600.1 | 21798944 |
| AT4G24310.1 | EES14570 | AT3G60600.1 | 21798944 |
| AT4G24310.1 | KXG31128 | AT3G60600.1 | 21798944 |
| AT4G24310.1 | EER96942 | AT4G26455.1 | 21798944 |
| AT4G24310.1 | EES14314 | AT4G26455.1 | 21798944 |
| AT4G24310.1 | OQU81760 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034995_P001 | Maize | plastid | 76.0 | 80.85 |
| TraesCS7A01G324500.1 | Wheat | plastid | 65.6 | 72.25 |
| TraesCS7B01G225000.1 | Wheat | plastid | 65.2 | 71.81 |
| TraesCS7D01G320400.1 | Wheat | plastid | 65.6 | 71.62 |
| HORVU7Hr1G077620.2 | Barley | plastid | 65.6 | 67.49 |
| Os08t0106501-01 | Rice | plastid | 55.6 | 62.05 |
| GSMUA_Achr7P23290_001 | Banana | endoplasmic reticulum | 46.8 | 53.67 |
| Solyc01g103580.2.1 | Tomato | plasma membrane | 45.6 | 51.35 |
| AT4G24310.1 | Thale cress | plastid | 41.6 | 48.83 |
| PGSC0003DMT400064047 | Potato | plasma membrane | 44.4 | 48.68 |
| Bra010492.1-P | Field mustard | plastid | 42.4 | 48.4 |
| CDY24837 | Canola | plasma membrane, plastid | 42.4 | 48.4 |
| CDY03457 | Canola | plastid | 41.6 | 48.15 |
| VIT_12s0035g00920.t01 | Wine grape | cytosol, endoplasmic reticulum, peroxisome | 46.0 | 48.12 |
| CDY08933 | Canola | plasma membrane | 42.4 | 47.96 |
| CDY34278 | Canola | plasma membrane, plastid | 41.6 | 47.27 |
| Bra013790.1-P | Field mustard | plasma membrane, plastid | 41.6 | 47.27 |
| AT3G02430.1 | Thale cress | plastid | 38.8 | 44.29 |
| CDY34728 | Canola | plasma membrane, plastid | 38.8 | 43.89 |
| Bra021460.1-P | Field mustard | plasma membrane, plastid | 38.8 | 43.89 |
| EES05060 | Sorghum | cytosol, plasma membrane, vacuole | 32.0 | 38.46 |
| CDY34726 | Canola | cytosol, extracellular, peroxisome | 24.4 | 38.12 |
| Bra021461.1-P | Field mustard | cytosol, extracellular, peroxisome | 24.4 | 38.12 |
| KXG32858 | Sorghum | plastid | 23.6 | 38.06 |
| EER94799 | Sorghum | plasma membrane | 29.2 | 37.82 |
| EER89477 | Sorghum | plastid | 31.6 | 37.26 |
| KXG33079 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 30.0 | 36.06 |
| OQU76129 | Sorghum | plastid | 31.6 | 34.8 |
| EER97642 | Sorghum | peroxisome | 30.0 | 33.94 |
| KXG19680 | Sorghum | plastid | 32.8 | 33.61 |
| EES19945 | Sorghum | cytosol | 32.0 | 33.47 |
| KXG32269 | Sorghum | cytosol, peroxisome, plasma membrane | 30.0 | 32.47 |
| KXG32859 | Sorghum | plastid | 29.2 | 32.16 |
| EES01865 | Sorghum | plasma membrane | 26.8 | 30.18 |
| KXG19859 | Sorghum | plasma membrane | 26.8 | 29.52 |
| EER88463 | Sorghum | plastid | 32.8 | 29.5 |
Protein Annotations
| MapMan:35.1 | EntrezGene:8068513 | UniProt:C5YLH1 | InterPro:DMP | EnsemblPlants:EES14365 | ProteinID:EES14365 |
| ProteinID:EES14365.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005783 | GO:GO:0008150 | GO:GO:0009705 | GO:GO:0009987 | GO:GO:0010256 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | PFAM:PF05078 | PANTHER:PTHR31621 | PANTHER:PTHR31621:SF10 | EnsemblPlantsGene:SORBI_3007G005600 |
| TMHMM:TMhelix | UniParc:UPI0001A8788E | RefSeq:XP_002444870.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr7:-:483527..484885
Molecular Weight (calculated)
25805.8 Da
IEP (calculated)
7.070
GRAVY (calculated)
0.228
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSSASV RQRPSAAAAP AGHGQQQQPI ILQDEQQQQQ DQAAAAAAAG EAPPPPPPQT SSALSQALAS TANLANLLPT GTLLAFNLLA PTFTNHGACD
101: ATTSLLTRCL LAVLALASAL ACFTDSLKSP HDGHVYYGVA TRTGLWLIDY PPDAPPLPTT TASCRYRLAF IDFVHAALSA AVFGVVAARD RDVVACLCGP
201: TPRRETKELI DVLPLGVGVL CSLLFVAFPT RRHGIGYPVV VVANGAANSS
101: ATTSLLTRCL LAVLALASAL ACFTDSLKSP HDGHVYYGVA TRTGLWLIDY PPDAPPLPTT TASCRYRLAF IDFVHAALSA AVFGVVAARD RDVVACLCGP
201: TPRRETKELI DVLPLGVGVL CSLLFVAFPT RRHGIGYPVV VVANGAANSS
001: MSSPSSLTQR NPTSSQEQSE SVPQLRRQTS QHAVMSQTLT SAANLANLLP TGTLLAFTLL IPVFTSNGSC DYPTQVLTIV LLTLLSISCF LSSFTDSVKA
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR
Arabidopsis Description
DMP3Protein DMP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9STW3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.