CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009557_P001	Maize	cytosol	85.77	86.86
TraesCS1B01G424300.1	Wheat	plasma membrane	72.38	78.64
TraesCS1A01G395800.1	Wheat	plasma membrane	71.13	76.92
TraesCS1D01G403800.1	Wheat	plasma membrane	70.71	76.82
Os05t0562800-02	Rice	plastid	75.31	75.63
HORVU1Hr1G087380.1	Barley	mitochondrion	69.87	68.16
KXG33079	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	58.58	67.31
GSMUA_Achr8P19660_001	Banana	cytosol	50.63	59.31
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, vacuole	44.77	50.71
GSMUA_Achr10P...	Banana	cytosol	49.37	50.64
EES05060	Sorghum	cytosol, plasma membrane, vacuole	41.0	47.12
EER89477	Sorghum	plastid	34.73	39.15
EER94799	Sorghum	plasma membrane	31.38	38.86
EER88463	Sorghum	plastid	44.35	38.13
EER97642	Sorghum	peroxisome	32.22	34.84
KXG32858	Sorghum	plastid	22.59	34.84
KXG32269	Sorghum	cytosol, peroxisome, plasma membrane	30.96	32.03
EES14365	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	33.47	32.0
KXG19859	Sorghum	plasma membrane	29.71	31.28
KXG32859	Sorghum	plastid	29.71	31.28
EES01865	Sorghum	plasma membrane	28.45	30.63
OQU76129	Sorghum	plastid	28.03	29.52
KXG19680	Sorghum	plastid	28.87	28.28

Protein Annotations

MapMan:35.1	EntrezGene:8074592	UniProt:C5YVJ1	InterPro:DMP	EnsemblPlants:EES19945	ProteinID:EES19945
ProteinID:EES19945.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005783	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0010256	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	PFAM:PF05078	PANTHER:PTHR31621	PANTHER:PTHR31621:SF0	EnsemblPlantsGene:SORBI_3009G231500
TMHMM:TMhelix	UniParc:UPI0001A89269	RefSeq:XP_002441515.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:57138398..57140235

Molecular Weight (calculated)

25649.6 Da

IEP (calculated)

6.669

GRAVY (calculated)

0.076

Length

239 amino acids

Sequence
(BLAST)

001: MASAAGTTTQ RRVGDDVESQ REQGDDGSSR REQEQEQRRP LLDEERRRSL AADDGGGMSP VQRAISQTYQ STAHLAKLLP TGTVLAFQLL SPVVTAEGHC
101: ARANRAMAAA LLALCALSCF VLSFTDSFRD AATGAVRYGF ATSRGLWVID GGAPLDDPRA AAAYRIRFLD LVHAVVSVMI FAAVALLDQN VVTCFYPVPS
201: EDARQVLTVL PIAIGVVGSM LFVTFPTTRH GIGFPLSQH

Best Arabidopsis Sequence Match ( AT5G46090.1 )
(BLAST)

001: MEINVDEEAG IIKEETVPLL DDQNRNRDLP DIERNTMMQK AIGKTFQTTA NLANLLPTGT VLAFQILSPI CTNVGRCDLT SRFMTALLVS ICGFSCFILS
101: FTDSYKDLNG SVCYGFATIH GFWIIDGSAT LPQELSKSYK LRFIDFVHAI MSFLVFGAVV LFDQNVVNCF YPEPSAEVVE LLTTLPVAVG VFCSMVFAKF
201: PTTRHGIGFP LSAK

Arabidopsis Description

DMP6Protein DMP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNL3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.