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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 2
  • endoplasmic reticulum 3
  • nucleus 1
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:plastid
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
PProwler:secretory
TargetP:plastid
WoLF PSORT:endoplasmic reticulum
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P08270_001
GSMUA_Achr4P15460_001
GSMUA_Achr5P20880_001
GSMUA_Achr6P14800_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G24310.1 GSMUA_Achr4P08270_001 AT3G16310.1 21798944
AT4G24310.1 GSMUA_Achr4P15460_001 AT3G16310.1 21798944
AT4G24310.1 GSMUA_Achr6P14800_001 AT3G16310.1 21798944
AT4G24310.1 GSMUA_Achr11P... AT3G60600.1 21798944
AT4G24310.1 GSMUA_Achr11P... AT3G60600.1 21798944
AT4G24310.1 GSMUA_Achr1P20280_001 AT3G60600.1 21798944
AT4G24310.1 GSMUA_Achr5P20880_001 AT3G60600.1 21798944
AT4G24310.1 GSMUA_Achr8P11120_001 AT3G60600.1 21798944
AT4G24310.1 GSMUA_Achr10P... AT4G26455.1 21798944
AT4G24310.1 GSMUA_Achr3P04120_001 AT4G26455.1 21798944
AT4G24310.1 GSMUA_Achr4P01630_001 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24837 Canola plasma membrane, plastid 57.8 57.53
Solyc01g103580.2.1 Tomato plasma membrane 58.26 57.21
Bra010492.1-P Field mustard plastid 57.34 57.08
CDY03457 Canola plastid 56.42 56.94
VIT_12s0035g00920.t01 Wine grape cytosol, endoplasmic reticulum, peroxisome 61.93 56.49
PGSC0003DMT400064047 Potato plasma membrane 58.72 56.14
CDY08933 Canola plasma membrane 56.88 56.11
Bra013790.1-P Field mustard plasma membrane, plastid 56.42 55.91
CDY34278 Canola plasma membrane, plastid 56.42 55.91
AT4G24310.1 Thale cress plastid 54.59 55.87
Os08t0106501-01 Rice plastid 56.88 55.36
AT3G02430.1 Thale cress plastid 52.75 52.51
CDY34728 Canola plasma membrane, plastid 53.21 52.49
Bra021460.1-P Field mustard plasma membrane, plastid 53.21 52.49
TraesCS7B01G225000.1 Wheat plastid 52.75 50.66
TraesCS7A01G324500.1 Wheat plastid 52.75 50.66
TraesCS7D01G320400.1 Wheat plastid 53.21 50.66
GSMUA_Achr8P19660_001 Banana cytosol 45.41 48.53
HORVU7Hr1G077620.2 Barley plastid 53.67 48.15
CDY34726 Canola cytosol, extracellular, peroxisome 35.32 48.12
Bra021461.1-P Field mustard cytosol, extracellular, peroxisome 35.32 48.12
Zm00001d034995_P001 Maize plastid 51.38 47.66
GSMUA_Achr4P10580_001 Banana cytosol 45.41 47.6
GSMUA_Achr4P02720_001 Banana plasma membrane 45.41 46.92
EES14365 Sorghum cytosol, endoplasmic reticulum, mitochondrion, plastid 53.67 46.8
GSMUA_Achr6P08370_001 Banana cytosol, endoplasmic reticulum, plasma membrane 36.7 41.24
GSMUA_AchrUn_... Banana plastid 36.7 40.61
GSMUA_Achr10P... Banana cytosol 42.66 39.91
GSMUA_Achr10P... Banana cytosol, plasma membrane, vacuole 38.53 39.81
GSMUA_Achr10P... Banana plastid 37.16 38.76
GSMUA_Achr11P... Banana plasma membrane 34.86 38.58
GSMUA_Achr8P32620_001 Banana plasma membrane 32.11 32.41
GSMUA_Achr5P26860_001 Banana plasma membrane 38.07 18.78
Protein Annotations
EnsemblPlants:GSMUA_Achr7P23290_001EnsemblPlants:GSMUA_Achr7T23290_001EnsemblPlantsGene:GSMUA_Achr7G23290_001GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:DMPPANTHER:PTHR31621PFAM:PF05078SEG:segTMHMM:TMhelixUniParc:UPI000294D768
UniProt:M0TK15MapMan:35.1::::
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G23290_001]
Coordinates
chr7:-:25574592..25575442
Molecular Weight (calculated)
23497.2 Da
IEP (calculated)
9.196
GRAVY (calculated)
0.122
Length
218 amino acids
Sequence
(BLAST)
001: MSLRATSKRS KEPPAESKAP RHEEEAAPPP PPASSSQQAI TQALASTAHL ANLLPTGTLL AFQLLTPVFT NNGSCDTATR LMTQALLLLL AASCFLACFT
101: DSIRSAADGR VYYGFATRRG MWLFNYDYVA SPSAALPDLS KYRVRAVDWV HAVLSVLVFA SVALRDRNAV SCLYPRPSRE TEEALSVLPL GVGVISSLLF
201: VVFPTRRHGI GYPVTNGS
Best Arabidopsis Sequence Match ( AT4G24310.1 )
(BLAST)
001: MSSPSSLTQR NPTSSQEQSE SVPQLRRQTS QHAVMSQTLT SAANLANLLP TGTLLAFTLL IPVFTSNGSC DYPTQVLTIV LLTLLSISCF LSSFTDSVKA
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR
Arabidopsis Description
DMP3Protein DMP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9STW3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.