Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- endoplasmic reticulum 2
- plasma membrane 3
- plastid 1
- extracellular 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | plasma membrane | 63.4 | 62.44 |
| TraesCS7B01G337100.1 | Wheat | plasma membrane | 57.22 | 57.51 |
| TraesCS7A01G438100.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 56.7 | 56.99 |
| Os03t0370400-01 | Rice | plastid | 56.7 | 56.99 |
| EER94799 | Sorghum | plasma membrane | 56.7 | 56.99 |
| Zm00001d047420_P001 | Maize | plasma membrane | 55.15 | 56.91 |
| HORVU7Hr1G100090.1 | Barley | plasma membrane | 56.19 | 56.48 |
| TraesCS7D01G428000.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 47.94 | 55.69 |
| GSMUA_Achr7P23290_001 | Banana | endoplasmic reticulum | 41.24 | 36.7 |
| GSMUA_Achr8P19660_001 | Banana | cytosol | 38.14 | 36.27 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, vacuole | 39.18 | 36.02 |
| GSMUA_AchrUn_... | Banana | plastid | 36.08 | 35.53 |
| GSMUA_Achr4P10580_001 | Banana | cytosol | 36.6 | 34.13 |
| GSMUA_Achr4P02720_001 | Banana | plasma membrane | 36.08 | 33.18 |
| GSMUA_Achr10P... | Banana | cytosol | 37.11 | 30.9 |
| GSMUA_Achr10P... | Banana | plastid | 30.93 | 28.71 |
| GSMUA_Achr8P32620_001 | Banana | plasma membrane | 30.93 | 27.78 |
| GSMUA_Achr5P26860_001 | Banana | plasma membrane | 37.63 | 16.52 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P08370_001 | EnsemblPlants:GSMUA_Achr6T08370_001 | EnsemblPlantsGene:GSMUA_Achr6G08370_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DMP | PANTHER:PTHR31621 | PFAM:PF05078 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295AC1C |
| UniProt:M0T586 | MapMan:35.1 | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G08370_001]
Coordinates
chr6:+:5579988..5580768
Molecular Weight (calculated)
21019.5 Da
IEP (calculated)
8.710
GRAVY (calculated)
0.291
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MINSSSSKAP RDAAPTIGDR AFKGAGDLIK LLPSGTVFLF QFLSPLLTNT GHCSTVNKYL TGVLLFVCGF SCCFSSFTDS YVEDDGRIYY GVVTKNGLWL
101: FSDPKAGTRD LSKYKLRMAD FVHASLALVV FAVVALLDDN TVSCFYPSLV SKEKTLVMVL PPLVGGVASF IFMLFPNRRH GIGYPPSGTT TKDS
101: FSDPKAGTRD LSKYKLRMAD FVHASLALVV FAVVALLDDN TVSCFYPSLV SKEKTLVMVL PPLVGGVASF IFMLFPNRRH GIGYPPSGTT TKDS
001: MSKTFKAIRD RTYSGVGDLI KLLPTGTVFL FQFLNPVLTN NGHCLLINKY LTGVLIVICA FSCCFTCFTD SYRTRDGYVH YGVATVKGLW PDSSSVDLSS
101: KRLRVGDFVH AFFSLIVFSV ISLLDANTVN CFYPGFGSAG KIFLMVLPPV IGVISGAVFT VFPSRRHGIG NPSDHSEDDA SEMK
101: KRLRVGDFVH AFFSLIVFSV ISLLDANTVN CFYPGFGSAG KIFLMVLPPV IGVISGAVFT VFPSRRHGIG NPSDHSEDDA SEMK
Arabidopsis Description
DMP2DMP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VDX9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.