Factsheet for PGSC0003DMT400064047

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 2
plasma membrane 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400015077
PGSC0003DMT400022426
PGSC0003DMT400050482
PGSC0003DMT400056956

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24310.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT4G24310.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT4G24310.1	PGSC0003DMT400056956	AT4G26455.1	21798944
AT4G24310.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT4G24310.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103580.2.1	Tomato	plasma membrane	90.79	93.24
GSMUA_Achr7P23290_001	Banana	endoplasmic reticulum	56.14	58.72
VIT_12s0035g00920.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	60.96	58.16
CDY03457	Canola	plastid	53.95	56.94
Bra010492.1-P	Field mustard	plastid	54.39	56.62
CDY24837	Canola	plasma membrane, plastid	54.39	56.62
CDY08933	Canola	plasma membrane	54.39	56.11
Bra013790.1-P	Field mustard	plasma membrane, plastid	53.95	55.91
CDY34278	Canola	plasma membrane, plastid	53.95	55.91
AT4G24310.1	Thale cress	plastid	52.19	55.87
AT3G02430.1	Thale cress	plastid	52.63	54.79
Bra021460.1-P	Field mustard	plasma membrane, plastid	52.19	53.85
CDY34728	Canola	plasma membrane, plastid	51.75	53.39
Os08t0106501-01	Rice	plastid	50.44	51.34
PGSC0003DMT400081227	Potato	plasma membrane	46.05	50.24
TraesCS7A01G324500.1	Wheat	plastid	50.0	50.22
TraesCS7D01G320400.1	Wheat	plastid	50.44	50.22
TraesCS7B01G225000.1	Wheat	plastid	49.56	49.78
Zm00001d034995_P001	Maize	plastid	49.12	47.66
HORVU7Hr1G077620.2	Barley	plastid	50.0	46.91
CDY34726	Canola	cytosol, extracellular, peroxisome	32.46	46.25
Bra021461.1-P	Field mustard	cytosol, extracellular, peroxisome	32.46	46.25
EES14365	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	48.68	44.4
PGSC0003DMT400035732	Potato	plasma membrane	42.11	43.05
PGSC0003DMT400081771	Potato	extracellular	30.26	39.66
PGSC0003DMT400090619	Potato	cytosol	35.09	35.09
PGSC0003DMT400015923	Potato	plasma membrane	32.02	34.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400064047	EnsemblPlantsGene:PGSC0003DMG401024894	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DMP
PANTHER:PTHR31621	PANTHER:PTHR31621:SF10	PFAM:PF05078	PGSC:PGSC0003DMG401024894	SEG:seg	TMHMM:TMhelix
UniParc:UPI000296C96A	UniProt:M1CBN1	MapMan:13.7.1.4	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401024894]

Coordinates

chr1:+:80261645..80262596

Molecular Weight (calculated)

24978.1 Da

IEP (calculated)

8.216

GRAVY (calculated)

0.129

Length

228 amino acids

Sequence
(BLAST)

001: MSLRARSTSS KQTSTSPDAS EIPLLPTNNN DNNNNNNHIP ERPPIPRPSI SQRALESTAH LANLLPTGTL LAFQLLIPIF TNNGTCDTAS RPMTLILLAL
101: LAFSCFLACF TDSYKAPDGQ IYYGLATFKG LWIFDYQAAS ISGVPGELNR YRVGFIDFVH AVLSVLVFIA VALRDKNVAN CFYPTPDHDT KQVLDVVPIG
201: IGVICSLLFV VFPTRRHGIG FPVTPDKR

Best Arabidopsis Sequence Match ( AT4G24310.1 )
(BLAST)

001: MSSPSSLTQR NPTSSQEQSE SVPQLRRQTS QHAVMSQTLT SAANLANLLP TGTLLAFTLL IPVFTSNGSC DYPTQVLTIV LLTLLSISCF LSSFTDSVKA
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR

Arabidopsis Description

DMP3Protein DMP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9STW3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.