Factsheet for Solyc01g103580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 2
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g120880.2.1
Solyc06g074170.2.1
Solyc07g066170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24310.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT4G24310.1	Solyc07g066170.2.1	AT4G26455.1	21798944
AT4G24310.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT4G24310.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064047	Potato	plasma membrane	93.24	90.79
CDY08933	Canola	plasma membrane	58.56	58.82
AT4G24310.1	Thale cress	plastid	56.31	58.69
VIT_12s0035g00920.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	63.06	58.58
Bra010492.1-P	Field mustard	plastid	57.66	58.45
CDY24837	Canola	plasma membrane, plastid	57.66	58.45
CDY03457	Canola	plastid	56.76	58.33
GSMUA_Achr7P23290_001	Banana	endoplasmic reticulum	57.21	58.26
CDY34278	Canola	plasma membrane, plastid	56.76	57.27
Bra013790.1-P	Field mustard	plasma membrane, plastid	56.76	57.27
AT3G02430.1	Thale cress	plastid	54.95	55.71
Bra021460.1-P	Field mustard	plasma membrane, plastid	54.95	55.2
CDY34728	Canola	plasma membrane, plastid	54.5	54.75
Os08t0106501-01	Rice	plastid	53.15	52.68
Solyc02g077640.1.1	Tomato	plasma membrane	49.1	52.15
TraesCS7A01G324500.1	Wheat	plastid	52.25	51.1
TraesCS7D01G320400.1	Wheat	plastid	52.7	51.09
TraesCS7B01G225000.1	Wheat	plastid	51.8	50.66
Zm00001d034995_P001	Maize	plastid	50.9	48.09
HORVU7Hr1G077620.2	Barley	plastid	51.8	47.33
CDY34726	Canola	cytosol, extracellular, peroxisome	33.78	46.88
Bra021461.1-P	Field mustard	cytosol, extracellular, peroxisome	33.78	46.88
Solyc10g008970.1.1	Tomato	plasma membrane	45.5	46.12
EES14365	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	51.35	45.6
Solyc12g005490.1.1	Tomato	plasma membrane	41.44	40.89
Solyc01g080490.2.1	Tomato	extracellular	31.98	40.8
Solyc05g007920.2.1	Tomato	cytosol	36.94	36.44
Solyc10g050200.1.1	Tomato	plasma membrane	31.53	33.18

Protein Annotations

MapMan:13.7.1.4	InterPro:DMP	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005783	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0010256
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	UniProt:K4B1T3	PFAM:PF05078	PANTHER:PTHR31621
PANTHER:PTHR31621:SF10	EnsemblPlantsGene:Solyc01g103580.2	EnsemblPlants:Solyc01g103580.2.1	TMHMM:TMhelix	UniParc:UPI0002768407	SEG:seg

Description

No Description!

Coordinates

chr1:+:92152884..92153909

Molecular Weight (calculated)

24245.4 Da

IEP (calculated)

7.460

GRAVY (calculated)

0.286

Length

222 amino acids

Sequence
(BLAST)

001: MDMSLRARST SSKQTSTDAS EIPLLPTSNN DHEAERPAIP RPSISQRALE STAHLANLLP TGTLLAFQLL IPIFTNNGSC DTASRPLTLV LLALLAFSCF
101: LACFTDSFKA PDGQIYYGLA TFKGLWIFDY QAASISGVPG ELSRYRVGFI DFVHAILSVL VFVAVALRDK NVVNCFYPTP DHETKQVLDV VPIGIGVICS
201: LLFVVFPTRR HGIGFPVTPD KR

Best Arabidopsis Sequence Match ( AT4G24310.1 )
(BLAST)

001: MSSPSSLTQR NPTSSQEQSE SVPQLRRQTS QHAVMSQTLT SAANLANLLP TGTLLAFTLL IPVFTSNGSC DYPTQVLTIV LLTLLSISCF LSSFTDSVKA
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR

Arabidopsis Description

DMP3Protein DMP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9STW3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.