Factsheet for Bra013790.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 3
mitochondrion 2
plasma membrane 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra003423.1-P
Bra006619.1-P
Bra007547.1-P
Bra014481.1-P
Bra020182.1-P
Bra026434.1-P
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24310.1	Bra027174.1-P	AT3G16310.1	21798944
AT4G24310.1	Bra003423.1-P	AT3G60600.1	21798944
AT4G24310.1	Bra007547.1-P	AT3G60600.1	21798944
AT4G24310.1	Bra014481.1-P	AT3G60600.1	21798944
AT4G24310.1	Bra026434.1-P	AT4G26455.1	21798944
AT4G24310.1	Bra002403.1-P	AT5G22290.1	21798944
AT4G24310.1	Bra006619.1-P	AT5G22290.1	21798944
AT4G24310.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34278	Canola	plasma membrane, plastid	100.0	100.0
AT4G24310.1	Thale cress	plastid	87.27	90.14
Bra010492.1-P	Field mustard	plastid	84.09	84.47
Bra021460.1-P	Field mustard	plasma membrane, plastid	68.18	67.87
Bra021461.1-P	Field mustard	cytosol, extracellular, peroxisome	44.55	61.25
Solyc01g103580.2.1	Tomato	plasma membrane	57.27	56.76
GSMUA_Achr7P23290_001	Banana	endoplasmic reticulum	55.91	56.42
PGSC0003DMT400064047	Potato	plasma membrane	55.91	53.95
VIT_12s0035g00920.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	57.73	53.14
Os08t0106501-01	Rice	plastid	51.36	50.45
TraesCS7D01G320400.1	Wheat	plastid	50.45	48.47
TraesCS7A01G324500.1	Wheat	plastid	49.55	48.02
TraesCS7B01G225000.1	Wheat	plastid	49.09	47.58
HORVU7Hr1G077620.2	Barley	plastid	50.91	46.09
Zm00001d034995_P001	Maize	plastid	45.45	42.55
Bra031289.1-P	Field mustard	plasma membrane	35.0	41.62
EES14365	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	47.27	41.6
Bra021010.1-P	Field mustard	cytosol, peroxisome, plasma membrane	39.55	40.65
Bra013307.1-P	Field mustard	cytosol, peroxisome, plasma membrane	40.91	40.18
Bra023874.1-P	Field mustard	plasma membrane	33.64	40.0
Bra024198.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane, plastid	35.45	39.0
Bra011032.1-P	Field mustard	plasma membrane	34.55	38.0
Bra031287.1-P	Field mustard	plasma membrane	35.0	37.75
Bra023875.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid, vacuole	34.55	37.62
Bra025040.1-P	Field mustard	cytosol, peroxisome, plasma membrane	38.64	35.27
Bra025039.1-P	Field mustard	plasma membrane	34.55	35.02
Bra006030.1-P	Field mustard	plasma membrane	29.55	34.39
Bra025657.1-P	Field mustard	plastid	33.64	30.33

Protein Annotations

EnsemblPlants:Bra013790.1	EnsemblPlants:Bra013790.1-P	EnsemblPlantsGene:Bra013790	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DMP	PANTHER:PTHR31621	PANTHER:PTHR31621:SF10	PFAM:PF05078	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002546288	UniProt:M4DBD0	MapMan:35.1	:	:	:

Description

AT4G24310 (E=6e-088) | unknown protein

Coordinates

chrA01:+:7760216..7760878

Molecular Weight (calculated)

23784.9 Da

IEP (calculated)

9.657

GRAVY (calculated)

0.128

Length

220 amino acids

Sequence
(BLAST)

001: MSSSSSLTQR NPTISQEPSD SPPPPPPPPQ LRRQPSISQH AVSQTLTSVA NLANLLPTGT LLAFQFLIPV FTSNGSCKYS TRVLTAVLLT LLSISCFLSS
101: FTDSVKAEDG NVYYGFATRK GMWVFDYPDP SGLGLPDLSK YRIRIVDWIH AVLSVLVFGA VALREKNAVS CFYPAPEQGT KKVLDIVPMG VGVICGLLFL
201: VFPARRHGIG YPVTGNGGRR

Best Arabidopsis Sequence Match ( AT4G24310.1 )
(BLAST)

001: MSSPSSLTQR NPTSSQEQSE SVPQLRRQTS QHAVMSQTLT SAANLANLLP TGTLLAFTLL IPVFTSNGSC DYPTQVLTIV LLTLLSISCF LSSFTDSVKA
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR

Arabidopsis Description

DMP3Protein DMP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9STW3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.