Factsheet for Bra006030.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 2
plasma membrane 5
plastid 1
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	cytosol, mitochondrion, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56548	Canola	plastid	100.0	78.1
CDX81135	Canola	plastid	98.94	77.27
Bra025657.1-P	Field mustard	plastid	92.06	71.31
AT5G39650.1	Thale cress	plastid	91.53	70.9
VIT_14s0108g00920.t01	Wine grape	plastid	66.67	58.88
KRG98790	Soybean	plasma membrane	66.67	58.88
KRG98781	Soybean	plasma membrane	66.14	58.41
GSMUA_Achr10P...	Banana	plastid	61.9	55.98
Zm00001d044822_P001	Maize	plastid	59.26	54.63
Solyc05g007920.2.1	Tomato	cytosol	64.02	53.78
EER89477	Sorghum	plastid	58.73	52.36
PGSC0003DMT400090619	Potato	cytosol	62.96	52.19
Bra010492.1-P	Field mustard	plastid	36.51	31.51
Bra024198.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane, plastid	32.8	31.0
Bra011032.1-P	Field mustard	plasma membrane	32.8	31.0
Bra021460.1-P	Field mustard	plasma membrane, plastid	35.45	30.32
Bra013790.1-P	Field mustard	plasma membrane, plastid	34.39	29.55
Bra031289.1-P	Field mustard	plasma membrane	28.57	29.19
Bra021010.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.8	28.97
Bra023875.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid, vacuole	30.69	28.71
Bra023874.1-P	Field mustard	plasma membrane	28.04	28.65
Bra013307.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.86	28.57
Bra031287.1-P	Field mustard	plasma membrane	30.16	27.94
Bra025039.1-P	Field mustard	plasma membrane	31.22	27.19
Bra025040.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.28	25.31
Bra021461.1-P	Field mustard	cytosol, extracellular, peroxisome	20.11	23.75

Protein Annotations

MapMan:13.7.1.4	EnsemblPlantsGene:Bra006030	EnsemblPlants:Bra006030.1	EnsemblPlants:Bra006030.1-P	InterPro:DMP	GO:GO:0000003
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005783
GO:GO:0007275	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0030154	GO:GO:0048235	UniProt:M4CP92	PFAM:PF05078	PANTHER:PTHR31621	PANTHER:PTHR31621:SF11
TMHMM:TMhelix	UniParc:UPI000253F830	SEG:seg	:	:	:

Description

AT5G39650 (E=2e-094) | unknown protein

Coordinates

chrA03:+:1673020..1673589

Molecular Weight (calculated)

20762.8 Da

IEP (calculated)

6.736

GRAVY (calculated)

0.446

Length

189 amino acids

Sequence
(BLAST)

001: MVAQGVQKTV SKTSMIVNFL PTGTLLMFEM VLPSIYRDGD CNGINTLMIH LLLLLCATSC FFFHFTDSFK AADEKIYYGF VTPRGLAVFM KPPPPECGGG
101: GDAFAEAEIP VTDERYKLKV NDFVHAVMSV LVFMAIAFSD RRVTGCLVPG KQKEMDQVME SFPLMVGIVC SALFLVFPTT RRGVGCMSA

Best Arabidopsis Sequence Match ( AT5G39650.1 )
(BLAST)

001: MEKTEESVGI RVYTATPPQK PSPSPPSRSP KPVLISSLPS LPSGAAAGGG RGRKRRMVAQ GVQKTVSKTS MLVNFLPTGT LLMFEMVLPS IYRDGDCNGI
101: NTLMIHLLLL LCAMSCFFFH FTDSFKASDG KIYYGFVTPR GLAVFMKPPP PEFGGGDVIA EAEIPVTDDR YKLTVNDFVH AVMSVLVFMA IAFSDRRVTG
201: CLFPGKEKEM DQVMESFPIM VGIVCSALFL VFPTTRYGVG CMTG

Arabidopsis Description

DMP9Protein DMP9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.