Factsheet for Bra010492.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plasma membrane
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra003423.1-P
Bra006619.1-P
Bra007547.1-P
Bra014481.1-P
Bra020182.1-P
Bra026434.1-P
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24310.1	Bra027174.1-P	AT3G16310.1	21798944
AT4G24310.1	Bra003423.1-P	AT3G60600.1	21798944
AT4G24310.1	Bra007547.1-P	AT3G60600.1	21798944
AT4G24310.1	Bra014481.1-P	AT3G60600.1	21798944
AT4G24310.1	Bra026434.1-P	AT4G26455.1	21798944
AT4G24310.1	Bra002403.1-P	AT5G22290.1	21798944
AT4G24310.1	Bra006619.1-P	AT5G22290.1	21798944
AT4G24310.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24837	Canola	plasma membrane, plastid	98.17	98.17
AT4G24310.1	Thale cress	plastid	83.11	85.45
Bra013790.1-P	Field mustard	plasma membrane, plastid	84.47	84.09
Bra021460.1-P	Field mustard	plasma membrane, plastid	69.41	68.78
Bra021461.1-P	Field mustard	cytosol, extracellular, peroxisome	45.21	61.88
Solyc01g103580.2.1	Tomato	plasma membrane	58.45	57.66
GSMUA_Achr7P23290_001	Banana	endoplasmic reticulum	57.08	57.34
VIT_12s0035g00920.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	61.19	56.07
PGSC0003DMT400064047	Potato	plasma membrane	56.62	54.39
Os08t0106501-01	Rice	plastid	50.23	49.11
TraesCS7D01G320400.1	Wheat	plastid	50.68	48.47
TraesCS7A01G324500.1	Wheat	plastid	49.77	48.02
TraesCS7B01G225000.1	Wheat	plastid	49.32	47.58
HORVU7Hr1G077620.2	Barley	plastid	50.68	45.68
Bra021010.1-P	Field mustard	cytosol, peroxisome, plasma membrane	42.92	43.93
Zm00001d034995_P001	Maize	plastid	46.58	43.4
Bra013307.1-P	Field mustard	cytosol, peroxisome, plasma membrane	43.38	42.41
EES14365	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	48.4	42.4
Bra024198.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane, plastid	37.44	41.0
Bra011032.1-P	Field mustard	plasma membrane	36.53	40.0
Bra031289.1-P	Field mustard	plasma membrane	32.88	38.92
Bra025039.1-P	Field mustard	plasma membrane	38.36	38.71
Bra023875.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid, vacuole	35.16	38.12
Bra025040.1-P	Field mustard	cytosol, peroxisome, plasma membrane	41.55	37.76
Bra031287.1-P	Field mustard	plasma membrane	35.16	37.75
Bra023874.1-P	Field mustard	plasma membrane	31.51	37.3
Bra006030.1-P	Field mustard	plasma membrane	31.51	36.51
Bra025657.1-P	Field mustard	plastid	35.16	31.56

Protein Annotations

EnsemblPlants:Bra010492.1	EnsemblPlants:Bra010492.1-P	EnsemblPlantsGene:Bra010492	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DMP	PANTHER:PTHR31621	PANTHER:PTHR31621:SF10	PFAM:PF05078	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002545C34	UniProt:M4D1Z2	MapMan:35.1	:	:	:

Description

AT4G24310 (E=2e-089) | unknown protein

Coordinates

chrA08:-:14810153..14810812

Molecular Weight (calculated)

23967.8 Da

IEP (calculated)

8.311

GRAVY (calculated)

-0.000

Length

219 amino acids

Sequence
(BLAST)

001: MSSSLKQRNP TSSQANDTDQ EPPESPPPQL RRQRSTSHQA MSQTLTSAAN LANLLPTGTL LAFQLLIPVF TTNGSCEYAT RVLTLVLLTL LSISCFLSSF
101: TDSVKAEDGN VYYGFATRKG MWVFDYPDPS GLGLPDLSKY KIRFVDWIHA VLSMLVFGAV AMRDNNAVSC FYPAPEQETK KVLDIVPVGV GVICSLLFLV
201: FPTRRHGVGY PVTGDGGRR

Best Arabidopsis Sequence Match ( AT4G24310.1 )
(BLAST)

001: MSSPSSLTQR NPTSSQEQSE SVPQLRRQTS QHAVMSQTLT SAANLANLLP TGTLLAFTLL IPVFTSNGSC DYPTQVLTIV LLTLLSISCF LSSFTDSVKA
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR

Arabidopsis Description

DMP3Protein DMP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9STW3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.