Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34278 | Canola | plasma membrane, plastid | 99.54 | 97.73 |
| AT4G24310.1 | Thale cress | plastid | 88.89 | 90.14 |
| CDY08933 | Canola | plasma membrane | 87.5 | 85.52 |
| CDY24837 | Canola | plasma membrane, plastid | 86.11 | 84.93 |
| CDY34728 | Canola | plasma membrane, plastid | 68.98 | 67.42 |
| CDY34726 | Canola | cytosol, extracellular, peroxisome | 45.37 | 61.25 |
| Solyc01g103580.2.1 | Tomato | plasma membrane | 58.33 | 56.76 |
| GSMUA_Achr7P23290_001 | Banana | endoplasmic reticulum | 56.94 | 56.42 |
| PGSC0003DMT400064047 | Potato | plasma membrane | 56.94 | 53.95 |
| VIT_12s0035g00920.t01 | Wine grape | cytosol, endoplasmic reticulum, peroxisome | 58.8 | 53.14 |
| Os08t0106501-01 | Rice | plastid | 52.31 | 50.45 |
| TraesCS7D01G320400.1 | Wheat | plastid | 51.39 | 48.47 |
| TraesCS7A01G324500.1 | Wheat | plastid | 50.46 | 48.02 |
| TraesCS7B01G225000.1 | Wheat | plastid | 50.0 | 47.58 |
| HORVU7Hr1G077620.2 | Barley | plastid | 51.85 | 46.09 |
| Zm00001d034995_P001 | Maize | plastid | 46.3 | 42.55 |
| CDY38623 | Canola | plasma membrane | 35.65 | 41.62 |
| EES14365 | Sorghum | cytosol, endoplasmic reticulum, mitochondrion, plastid | 48.15 | 41.6 |
| CDX76524 | Canola | cytosol, peroxisome, plasma membrane | 40.74 | 41.12 |
| CDX76523 | Canola | cytosol, peroxisome, plasma membrane | 40.74 | 41.12 |
| CDY55785 | Canola | cytosol, peroxisome, plasma membrane | 40.74 | 41.12 |
| CDY44328 | Canola | plasma membrane | 35.19 | 41.08 |
| CDX78854 | Canola | cytosol, peroxisome, plasma membrane | 41.67 | 40.18 |
| CDY60883 | Canola | cytosol | 41.67 | 40.18 |
| CDY19288 | Canola | extracellular, plasma membrane, vacuole | 34.26 | 40.0 |
| CDY37280 | Canola | plasma membrane | 34.26 | 40.0 |
| CDY29909 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 35.65 | 38.5 |
| CDX92877 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 35.65 | 38.5 |
| CDY38387 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 35.65 | 38.5 |
| CDY35189 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 35.19 | 38.0 |
| CDY38622 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 35.19 | 37.25 |
| CDY37281 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 34.72 | 37.13 |
| CDY19287 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 33.8 | 36.14 |
| CDY33452 | Canola | plasma membrane | 35.65 | 35.48 |
| CDY70034 | Canola | cytosol, peroxisome, plasma membrane | 39.35 | 35.27 |
| CDX77629 | Canola | cytosol, peroxisome, plasma membrane | 39.35 | 35.27 |
| CDY34571 | Canola | plasma membrane | 34.72 | 34.56 |
| CDX77630 | Canola | plasma membrane | 34.26 | 34.1 |
| CDX74441 | Canola | plastid | 33.8 | 29.92 |
| CDY56548 | Canola | plastid | 31.94 | 28.51 |
| CDX81135 | Canola | plastid | 31.94 | 28.51 |
| CDY38243 | Canola | cytosol | 17.59 | 27.94 |
| CDY30259 | Canola | plastid | 15.28 | 24.81 |
| CDY44329 | Canola | endoplasmic reticulum, extracellular, vacuole | 4.63 | 22.22 |
Protein Annotations
| EnsemblPlants:CDY03457 | EnsemblPlantsGene:GSBRNA2T00116111001 | GO:A0A078EQW5 | InterPro:DMP | PANTHER:PTHR31621 | PANTHER:PTHR31621:SF10 |
| PFAM:PF05078 | ProteinID:CDY03457 | ProteinID:CDY03457.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE5856 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC01g16250D
Coordinates
chrLK031943:-:568415..569065
Molecular Weight (calculated)
23397.3 Da
IEP (calculated)
9.182
GRAVY (calculated)
0.162
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSSLTQR NPTISQEPSD SPPPPQLRRQ PSISQHAVSQ TLTSVANLAN LLPTGTLLAF QFLIPVFTSN GSCEYSTRVL TAVLLTLLSI SCFLSSFTDS
101: VKAEDGNVYY GFATRKGMWV FDYPDPSGLG LPDLSKYRIR IVDWIHAVLS VLVFGAVALR EKNAVSCFYP APEQGTKKVL DIVPMGVGVI CGLLFLVFPA
201: RRHGIGYPVT GNGGRR
101: VKAEDGNVYY GFATRKGMWV FDYPDPSGLG LPDLSKYRIR IVDWIHAVLS VLVFGAVALR EKNAVSCFYP APEQGTKKVL DIVPMGVGVI CGLLFLVFPA
201: RRHGIGYPVT GNGGRR
001: MSSPSSLTQR NPTSSQEQSE SVPQLRRQTS QHAVMSQTLT SAANLANLLP TGTLLAFTLL IPVFTSNGSC DYPTQVLTIV LLTLLSISCF LSSFTDSVKA
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR
Arabidopsis Description
DMP3Protein DMP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9STW3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.