Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 2
- extracellular 1
- golgi 1
- plasma membrane 2
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35189 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 99.0 | 99.0 |
| CDX92877 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 91.5 | 91.5 |
| CDY29909 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 90.5 | 90.5 |
| AT4G28485.2 | Thale cress | plasma membrane, plastid | 82.0 | 82.0 |
| CDY33452 | Canola | plasma membrane | 47.5 | 43.78 |
| CDY34571 | Canola | plasma membrane | 47.0 | 43.32 |
| CDX77630 | Canola | plasma membrane | 46.5 | 42.86 |
| CDX76523 | Canola | cytosol, peroxisome, plasma membrane | 45.5 | 42.52 |
| CDX76524 | Canola | cytosol, peroxisome, plasma membrane | 45.5 | 42.52 |
| CDY55785 | Canola | cytosol, peroxisome, plasma membrane | 45.5 | 42.52 |
| CDX78854 | Canola | cytosol, peroxisome, plasma membrane | 47.0 | 41.96 |
| CDY60883 | Canola | cytosol | 46.5 | 41.52 |
| CDY44328 | Canola | plasma membrane | 37.0 | 40.0 |
| CDY38623 | Canola | plasma membrane | 37.0 | 40.0 |
| CDY70034 | Canola | cytosol, peroxisome, plasma membrane | 47.5 | 39.42 |
| CDX77629 | Canola | cytosol, peroxisome, plasma membrane | 47.5 | 39.42 |
| CDY37280 | Canola | plasma membrane | 36.0 | 38.92 |
| CDY19288 | Canola | extracellular, plasma membrane, vacuole | 34.5 | 37.3 |
| CDY08933 | Canola | plasma membrane | 40.5 | 36.65 |
| CDY24837 | Canola | plasma membrane, plastid | 40.0 | 36.53 |
| CDY34728 | Canola | plasma membrane, plastid | 39.5 | 35.75 |
| CDY03457 | Canola | plastid | 38.5 | 35.65 |
| CDY34278 | Canola | plasma membrane, plastid | 38.5 | 35.0 |
| CDY37281 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 32.5 | 32.18 |
| CDY19287 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 32.0 | 31.68 |
| CDY38622 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 32.0 | 31.37 |
| CDY30259 | Canola | plastid | 20.0 | 30.08 |
| CDX74441 | Canola | plastid | 36.5 | 29.92 |
| CDY38243 | Canola | cytosol | 20.0 | 29.41 |
| CDX81135 | Canola | plastid | 35.5 | 29.34 |
| CDY56548 | Canola | plastid | 35.5 | 29.34 |
| CDY34726 | Canola | cytosol, extracellular, peroxisome | 22.0 | 27.5 |
| CDY44329 | Canola | endoplasmic reticulum, extracellular, vacuole | 5.5 | 24.44 |
Protein Annotations
| EnsemblPlants:CDY38387 | EnsemblPlantsGene:GSBRNA2T00065811001 | GO:A0A078HKI7 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DMP | PANTHER:PTHR31621 | PANTHER:PTHR31621:SF6 | PFAM:PF05078 | ProteinID:CDY38387 | ProteinID:CDY38387.1 |
| TMHMM:TMhelix | UniParc:UPI0004EE20A3 | UniProt:A0A078HKI7 | MapMan:35.1 | : | : |
Description
BnaC01g09960DBnaC01g09960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKI7]
Coordinates
chrLK032423:+:125848..126531
Molecular Weight (calculated)
22311.8 Da
IEP (calculated)
9.160
GRAVY (calculated)
0.278
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MEETQPLLIA SLPEAPRKPK SKVQKMARKA FKGTAHLSNL LPTGSVMGFQ IMCPVLSHQG QCPTIASRWL TCFLVFVCAV SCFLLSFTDS FRDPRGKVRY
101: GLATRSGLSV MEGSITLTDE EKEKYKLRFL DFVHAFMSML VFFAISMIDQ NVIRCLFPVP SEDIKELLTS LPIIIGVICG GFFLVFPTRR HGIGSPLTKE
101: GLATRSGLSV MEGSITLTDE EKEKYKLRFL DFVHAFMSML VFFAISMIDQ NVIRCLFPVP SEDIKELLTS LPIIIGVICG GFFLVFPTRR HGIGSPLTKE
001: MEETKQSLIA SLPSAPRKPK SKVERVVRKT FKGTAHLSNL LPTGSVMSFQ IMCPVLTHQG QCPTITSRWL TCFLVSLCAI SCFLFSFTDS IRDPNGKVRY
101: GLATWSGLLV MDGSITLTEE EKEKYKLKIL DFIHAIMSML VFFAVSMFDQ NVTRCLFPVP SEETKEILTS LPFVIGVICG AFFLAFPTRR HGIGSPLTKE
101: GLATWSGLLV MDGSITLTEE EKEKYKLKIL DFIHAIMSML VFFAVSMFDQ NVTRCLFPVP SEETKEILTS LPFVIGVICG AFFLAFPTRR HGIGSPLTKE
Arabidopsis Description
DMP7Protein DMP7 [Source:UniProtKB/Swiss-Prot;Acc:Q5XV67]
SUBAcon: [plasma membrane,plastid]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.