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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • plastid 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67837
CDX70995
CDX71796
CDX88803
CDX89063
CDX89333
CDX92368
CDX94330
CDX97739
CDY09128
CDY30157
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G24310.1 CDX97739 AT3G16310.1 21798944
AT4G24310.1 CDY30157 AT3G16310.1 21798944
AT4G24310.1 CDX67837 AT3G60600.1 21798944
AT4G24310.1 CDX71796 AT3G60600.1 21798944
AT4G24310.1 CDX89063 AT3G60600.1 21798944
AT4G24310.1 CDY41153 AT3G60600.1 21798944
AT4G24310.1 CDY48365 AT3G60600.1 21798944
AT4G24310.1 CDX89333 AT4G26455.1 21798944
AT4G24310.1 CDX94330 AT4G26455.1 21798944
AT4G24310.1 CDX70995 AT5G22290.1 21798944
AT4G24310.1 CDX88803 AT5G22290.1 21798944
AT4G24310.1 CDX92368 AT5G22290.1 21798944
AT4G24310.1 CDY09128 AT5G22290.1 21798944
AT4G24310.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24837 Canola plasma membrane, plastid 95.02 95.89
CDY03457 Canola plastid 85.52 87.5
AT4G24310.1 Thale cress plastid 84.16 87.32
CDY34278 Canola plasma membrane, plastid 85.07 85.45
CDY34728 Canola plasma membrane, plastid 68.78 68.78
CDY34726 Canola cytosol, extracellular, peroxisome 45.7 63.12
Solyc01g103580.2.1 Tomato plasma membrane 58.82 58.56
GSMUA_Achr7P23290_001 Banana endoplasmic reticulum 56.11 56.88
VIT_12s0035g00920.t01 Wine grape cytosol, endoplasmic reticulum, peroxisome 59.73 55.23
PGSC0003DMT400064047 Potato plasma membrane 56.11 54.39
Os08t0106501-01 Rice plastid 50.23 49.55
TraesCS7D01G320400.1 Wheat plastid 50.68 48.91
TraesCS7A01G324500.1 Wheat plastid 49.77 48.46
TraesCS7B01G225000.1 Wheat plastid 49.32 48.02
HORVU7Hr1G077620.2 Barley plastid 50.68 46.09
Zm00001d034995_P001 Maize plastid 46.15 43.4
CDY55785 Canola cytosol, peroxisome, plasma membrane 41.18 42.52
CDX76524 Canola cytosol, peroxisome, plasma membrane 41.18 42.52
CDX76523 Canola cytosol, peroxisome, plasma membrane 41.18 42.52
EES14365 Sorghum cytosol, endoplasmic reticulum, mitochondrion, plastid 47.96 42.4
CDX78854 Canola cytosol, peroxisome, plasma membrane 41.18 40.62
CDY60883 Canola cytosol 41.18 40.62
CDY38387 Canola cytosol, endoplasmic reticulum, plasma membrane 36.65 40.5
CDY29909 Canola cytosol, endoplasmic reticulum, plasma membrane, plastid 36.65 40.5
CDX92877 Canola cytosol, endoplasmic reticulum, plasma membrane, plastid 36.65 40.5
CDY35189 Canola cytosol, endoplasmic reticulum, plasma membrane 36.2 40.0
CDY38623 Canola plasma membrane 33.48 40.0
CDY44328 Canola plasma membrane 33.48 40.0
CDY33452 Canola plasma membrane 38.01 38.71
CDY37280 Canola plasma membrane 32.13 38.38
CDY19288 Canola extracellular, plasma membrane, vacuole 32.13 38.38
CDY34571 Canola plasma membrane 37.1 37.79
CDX77630 Canola plasma membrane 36.65 37.33
CDY37281 Canola endoplasmic reticulum, plasma membrane, plastid, vacuole 33.94 37.13
CDY38622 Canola endoplasmic reticulum, plasma membrane, vacuole 33.94 36.76
CDY70034 Canola cytosol, peroxisome, plasma membrane 39.82 36.51
CDX77629 Canola cytosol, peroxisome, plasma membrane 39.82 36.51
CDY19287 Canola endoplasmic reticulum, plasma membrane, plastid, vacuole 33.03 36.14
CDX74441 Canola plastid 33.48 30.33
CDX81135 Canola plastid 32.13 29.34
CDY56548 Canola plastid 31.67 28.93
CDY38243 Canola cytosol 16.74 27.21
CDY30259 Canola plastid 15.84 26.32
CDY44329 Canola endoplasmic reticulum, extracellular, vacuole 4.52 22.22
Protein Annotations
EnsemblPlants:CDY08933EnsemblPlantsGene:GSBRNA2T00000964001GO:A0A078FAS3GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:DMPPANTHER:PTHR31621PANTHER:PTHR31621:SF10PFAM:PF05078ProteinID:CDY08933ProteinID:CDY08933.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EC7968UniProt:A0A078FAS3MapMan:35.1:
Description
BnaC08g11630DBnaC08g11630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAS3]
Coordinates
chrLK031990:+:572163..572828
Molecular Weight (calculated)
24263.2 Da
IEP (calculated)
7.943
GRAVY (calculated)
0.013
Length
221 amino acids
Sequence
(BLAST)
001: MSSSLKQRNP TSSQADDTEA EQELSESPPP QLRRQRSTSH QAMSQTLTSA ANLANLLPTG TLLAFQLLIP VFTTNGSCEY ATRVLTLVLL TLLSISCFLS
101: SFTDSVKAED GNVYYGFATR KGMWVFDYPD PSGLGLPDLS KYRIRFVDWI HAVLSMLVFG AVAMRDKNAV SCFYPAPEQE TKKVLDIVPI GVGVICGLLF
201: LVFPTRRHGF GYPVTGDGGR R
Best Arabidopsis Sequence Match ( AT4G24310.1 )
(BLAST)
001: MSSPSSLTQR NPTSSQEQSE SVPQLRRQTS QHAVMSQTLT SAANLANLLP TGTLLAFTLL IPVFTSNGSC DYPTQVLTIV LLTLLSISCF LSSFTDSVKA
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR
Arabidopsis Description
DMP3Protein DMP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9STW3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.