CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013307.1-P	Field mustard	cytosol, peroxisome, plasma membrane	99.55	99.55
CDY60883	Canola	cytosol	96.88	96.88
CDX76523	Canola	cytosol, peroxisome, plasma membrane	87.05	91.12
CDX76524	Canola	cytosol, peroxisome, plasma membrane	87.05	91.12
CDY55785	Canola	cytosol, peroxisome, plasma membrane	87.05	91.12
AT4G18425.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	83.48	87.79
CDY33452	Canola	plasma membrane	63.39	65.44
PGSC0003DMT400081227	Potato	plasma membrane	59.82	64.11
CDY34571	Canola	plasma membrane	62.05	64.06
CDX77630	Canola	plasma membrane	62.05	64.06
CDX77629	Canola	cytosol, peroxisome, plasma membrane	68.75	63.9
CDY70034	Canola	cytosol, peroxisome, plasma membrane	68.3	63.49
VIT_13s0106g00720.t01	Wine grape	plasma membrane	58.93	62.56
Solyc02g077640.1.1	Tomato	plasma membrane	58.04	62.2
KRH21356	Soybean	cytosol, peroxisome, plasma membrane	56.7	60.19
GSMUA_Achr4P10580_001	Banana	cytosol	53.12	57.21
KRH20387	Soybean	plasma membrane	54.02	55.76
CDY38243	Canola	cytosol	33.48	55.15
GSMUA_Achr4P02720_001	Banana	plasma membrane	51.79	54.98
VIT_10s0003g00320.t01	Wine grape	plasma membrane	58.93	53.88
KRH50120	Soybean	peroxisome	45.54	49.04
KXG33079	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	44.2	47.6
TraesCS3B01G273700.1	Wheat	cytosol, peroxisome, plasma membrane	39.73	47.59
CDY38387	Canola	cytosol, endoplasmic reticulum, plasma membrane	41.96	47.0
CDY29909	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	41.07	46.0
CDY35189	Canola	cytosol, endoplasmic reticulum, plasma membrane	41.07	46.0
TraesCS3D01G245600.1	Wheat	cytosol, peroxisome, plasma membrane	43.75	45.79
Zm00001d011558_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	42.41	45.67
CDX92877	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	40.62	45.5
HORVU1Hr1G087380.1	Barley	mitochondrion	49.11	44.9
Os05t0562800-02	Rice	plastid	47.32	44.54
TraesCS3A01G245800.1	Wheat	cytosol, peroxisome, plasma membrane	43.3	44.5
CDY24837	Canola	plasma membrane, plastid	41.96	42.92
CDY03457	Canola	plastid	40.18	41.67
CDY34728	Canola	plasma membrane, plastid	41.07	41.63
CDY08933	Canola	plasma membrane	40.62	41.18
CDY34278	Canola	plasma membrane, plastid	40.18	40.91
CDY44328	Canola	plasma membrane	32.59	39.46
CDY38623	Canola	plasma membrane	32.59	39.46
Os06t0352200-01	Rice	plasma membrane, plastid	43.75	38.74
CDY37280	Canola	plasma membrane	31.25	37.84
CDY19288	Canola	extracellular, plasma membrane, vacuole	31.25	37.84
CDY37281	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	32.59	36.14
CDY19287	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	31.7	35.15
CDY38622	Canola	endoplasmic reticulum, plasma membrane, vacuole	31.7	34.8
CDY34726	Canola	cytosol, extracellular, peroxisome	23.21	32.5
CDY44329	Canola	endoplasmic reticulum, extracellular, vacuole	6.25	31.11
CDY30259	Canola	plastid	18.3	30.83
CDX74441	Canola	plastid	33.48	30.74
CDY56548	Canola	plastid	31.7	29.34
CDX81135	Canola	plastid	31.7	29.34

Protein Annotations

EnsemblPlants:CDX78854	EnsemblPlantsGene:GSBRNA2T00131330001	GO:A0A078CS14	InterPro:DMP	PANTHER:PTHR31621	PANTHER:PTHR31621:SF0
PFAM:PF05078	ProteinID:CDX78854	ProteinID:CDX78854.1	TMHMM:TMhelix	UniParc:UPI0004EDBDB9	MapMan:35.1

Description

BnaA01g09210D

Coordinates

chrLK031816:-:443428..444102

Molecular Weight (calculated)

24639.8 Da

IEP (calculated)

5.644

GRAVY (calculated)

0.197

Length

224 amino acids

Sequence
(BLAST)

001: MNKGKSFKDM EINVVDRDHQ GNAQEEIEKP LLEEDKDFPD IERTTWIQKA IGQTFQTTAH LANLLPTGTV LAFQLLSPIF SNGGQCDVVS KIMTSVLVAV
101: CGFSCFILSF TDSYKDKNGT ICYGFATIHG FWIIDGSATL PQELSKKYKL RFIDFAHAFM SLLVFGAVVL FDRNTVNCFF PAPSAEALEV LTALPVGVGV
201: FCSMLFATFP TTRNGIGFPV PGNK

Best Arabidopsis Sequence Match ( AT4G18425.1 )
(BLAST)

001: MEIKVDEGHQ KGTKEDITRP LLEEDKDFPD IERTTWIQKA IGQTFQTTAH LANLLPTGTV LAFQLLSPIF SNGGQCDLVS KIMTSTLVAI CGFSCFILSF
101: TDSYKDKNGT ICYGLATIHG FWIIDGSTTL PQELSKRYKL RFIDFVHAFM SLFVFGAVVL FDRNAVNCFF PSPSAEALEV LTALPVGVGV FSSMLFATFP
201: TTRNGIGFPL SSK

Arabidopsis Description

DMP4Protein DMP4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L928]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.