CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29909	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	99.0	99.0
Bra024198.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane, plastid	98.5	98.5
CDY38387	Canola	cytosol, endoplasmic reticulum, plasma membrane	91.5	91.5
CDY35189	Canola	cytosol, endoplasmic reticulum, plasma membrane	91.5	91.5
AT4G28485.2	Thale cress	plasma membrane, plastid	83.5	83.5
CDY33452	Canola	plasma membrane	47.5	43.78
CDY34571	Canola	plasma membrane	47.0	43.32
CDX77630	Canola	plasma membrane	46.5	42.86
CDX76523	Canola	cytosol, peroxisome, plasma membrane	44.0	41.12
CDX76524	Canola	cytosol, peroxisome, plasma membrane	44.0	41.12
CDY55785	Canola	cytosol, peroxisome, plasma membrane	44.0	41.12
CDX78854	Canola	cytosol, peroxisome, plasma membrane	45.5	40.62
CDY60883	Canola	cytosol	45.0	40.18
CDY70034	Canola	cytosol, peroxisome, plasma membrane	48.0	39.83
CDX77629	Canola	cytosol, peroxisome, plasma membrane	48.0	39.83
CDY38623	Canola	plasma membrane	36.5	39.46
CDY44328	Canola	plasma membrane	36.0	38.92
CDY37280	Canola	plasma membrane	35.5	38.38
CDY19288	Canola	extracellular, plasma membrane, vacuole	34.0	36.76
CDY34728	Canola	plasma membrane, plastid	40.5	36.65
CDY08933	Canola	plasma membrane	40.5	36.65
CDY24837	Canola	plasma membrane, plastid	40.0	36.53
CDY03457	Canola	plastid	38.5	35.65
CDY34278	Canola	plasma membrane, plastid	38.5	35.0
CDY37281	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	33.0	32.67
CDY19287	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	32.5	32.18
CDY38622	Canola	endoplasmic reticulum, plasma membrane, vacuole	31.5	30.88
CDX74441	Canola	plastid	35.0	28.69
CDY38243	Canola	cytosol	19.5	28.68
CDY34726	Canola	cytosol, extracellular, peroxisome	22.5	28.12
CDX81135	Canola	plastid	34.0	28.1
CDY56548	Canola	plastid	34.0	28.1
CDY30259	Canola	plastid	18.5	27.82
CDY44329	Canola	endoplasmic reticulum, extracellular, vacuole	5.5	24.44

Protein Annotations

EnsemblPlants:CDX92877	EnsemblPlantsGene:GSBRNA2T00154716001	GO:A0A078DVG6	InterPro:DMP	PANTHER:PTHR31621	PANTHER:PTHR31621:SF6
PFAM:PF05078	ProteinID:CDX92877	ProteinID:CDX92877.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE20A9
MapMan:35.1	:	:	:	:	:

Description

BnaC07g41350D

Coordinates

chrLK031873:-:1289656..1290457

Molecular Weight (calculated)

22300.8 Da

IEP (calculated)

9.161

GRAVY (calculated)

0.279

Length

200 amino acids

Sequence
(BLAST)

001: MAETQHLLIS SLPEAPRKPK SKVQKVARKA FKGTAHLSNL LPTGSVMGFQ IMCPVLTHQG QCPTIASRWL TCFLVFVCAV SCFLLSFTDS FRDPRGKVRY
101: GLATPSGLMV MDGTITLTEE EKEKYKLRFL DFMHAIMSML VFFAISMFDQ NVIRCLFPVP SEDTKELLTG LPFIIGVVCG GFFLVFPTRR HGIGSPLTKE

Best Arabidopsis Sequence Match ( AT4G28485.2 )
(BLAST)

001: MEETKQSLIA SLPSAPRKPK SKVERVVRKT FKGTAHLSNL LPTGSVMSFQ IMCPVLTHQG QCPTITSRWL TCFLVSLCAI SCFLFSFTDS IRDPNGKVRY
101: GLATWSGLLV MDGSITLTEE EKEKYKLKIL DFIHAIMSML VFFAVSMFDQ NVTRCLFPVP SEETKEILTS LPFVIGVICG AFFLAFPTRR HGIGSPLTKE

Arabidopsis Description

DMP7Protein DMP7 [Source:UniProtKB/Swiss-Prot;Acc:Q5XV67]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.