Factsheet for VIT_05s0020g02280.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
extracellular 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38623	Canola	plasma membrane	65.1	67.57
Bra031289.1-P	Field mustard	plasma membrane	64.58	67.03
PGSC0003DMT400081771	Potato	extracellular	60.42	66.67
CDY44328	Canola	plasma membrane	64.06	66.49
AT3G21550.1	Thale cress	plasma membrane	63.02	65.76
Solyc01g080490.2.1	Tomato	extracellular	59.38	65.52
Bra023874.1-P	Field mustard	plasma membrane	63.02	65.41
CDY37280	Canola	plasma membrane	63.02	65.41
GSMUA_Achr11P...	Banana	plasma membrane	66.15	64.47
CDY19288	Canola	extracellular, plasma membrane, vacuole	61.98	64.32
KRH20960	Soybean	plastid	64.06	60.29
Zm00001d047420_P001	Maize	plasma membrane	51.56	52.66
KRH50953	Soybean	plastid	59.9	52.27
KRH02164	Soybean	endoplasmic reticulum	56.77	52.15
Os03t0370400-01	Rice	plastid	52.08	51.81
EER94799	Sorghum	plasma membrane	51.56	51.3
KRH50952	Soybean	plasma membrane, plastid	58.85	50.9
HORVU7Hr1G100090.1	Barley	plasma membrane	51.04	50.78
TraesCS7A01G438100.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	51.04	50.78
TraesCS7B01G337100.1	Wheat	plasma membrane	51.04	50.78
TraesCS7D01G428000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	41.15	47.31
VIT_12s0028g03070.t01	Wine grape	plasma membrane	42.71	38.32
VIT_13s0106g00720.t01	Wine grape	plasma membrane	40.62	36.97
VIT_12s0035g00920.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	43.23	34.73
VIT_10s0003g00320.t01	Wine grape	plasma membrane	43.23	33.88
VIT_18s0086g00700.t01	Wine grape	plasma membrane	34.9	31.46
VIT_14s0108g00920.t01	Wine grape	plastid	29.69	26.64

Protein Annotations

EntrezGene:100264790	MapMan:35.1	ProteinID:CCB50365	ProteinID:CCB50365.1	InterPro:DMP	UniProt:F6HDJ4
EMBL:FN595749	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005783	GO:GO:0007275	GO:GO:0008150	GO:GO:0009705	GO:GO:0009838	GO:GO:0009987
GO:GO:0010256	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	PFAM:PF05078	PANTHER:PTHR31621
PANTHER:PTHR31621:SF1	TMHMM:TMhelix	UniParc:UPI00015C7EA3	ArrayExpress:VIT_05s0020g02280	EnsemblPlantsGene:VIT_05s0020g02280	EnsemblPlants:VIT_05s0020g02280.t01
unigene:Vvi.21831	RefSeq:XP_010649829.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:3998933..3999703

Molecular Weight (calculated)

20532.6 Da

IEP (calculated)

7.905

GRAVY (calculated)

0.245

Length

192 amino acids

Sequence
(BLAST)

001: MGGTSKSSGS GKSTQPSITD RTFTGVGNLI KLLPTGTVFL FQFLNPVLTN NGHCHTINKY LTGILLGVCG FSCCFSSFTD SYFGSDGMTH YGVATKNGLW
101: PSSASESVNL SAYKLRVGDF VHAFLSLTVF AVVALLDSNT VDCFYPSFES TEKLLLMVLP PVIGAISSTV FMVFPNKRHG IGYPASQTSH ES

Best Arabidopsis Sequence Match ( AT3G21550.1 )
(BLAST)

001: MSKTFKAIRD RTYSGVGDLI KLLPTGTVFL FQFLNPVLTN NGHCLLINKY LTGVLIVICA FSCCFTCFTD SYRTRDGYVH YGVATVKGLW PDSSSVDLSS
101: KRLRVGDFVH AFFSLIVFSV ISLLDANTVN CFYPGFGSAG KIFLMVLPPV IGVISGAVFT VFPSRRHGIG NPSDHSEDDA SEMK

Arabidopsis Description

DMP2DMP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VDX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.