Factsheet for VIT_12s0028g03070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
BaCelLo:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55890	Soybean	plasma membrane	57.01	58.94
GSMUA_Achr4P02720_001	Banana	plasma membrane	57.01	57.82
GSMUA_Achr4P10580_001	Banana	cytosol	55.61	57.21
VIT_13s0106g00720.t01	Wine grape	plasma membrane	55.14	55.92
Solyc10g008970.1.1	Tomato	plasma membrane	55.14	53.88
PGSC0003DMT400035732	Potato	plasma membrane	55.61	53.36
Solyc12g005490.1.1	Tomato	plasma membrane	55.14	52.44
KXG33079	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	49.07	50.48
VIT_10s0003g00320.t01	Wine grape	plasma membrane	55.61	48.57
Zm00001d011558_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	46.73	48.08
Os05t0562800-02	Rice	plastid	52.8	47.48
TraesCS3B01G273700.1	Wheat	cytosol, peroxisome, plasma membrane	40.19	45.99
TraesCS3D01G245600.1	Wheat	cytosol, peroxisome, plasma membrane	45.79	45.79
HORVU1Hr1G087380.1	Barley	mitochondrion	50.47	44.08
TraesCS3A01G245800.1	Wheat	cytosol, peroxisome, plasma membrane	44.86	44.04
VIT_05s0020g02280.t01	Wine grape	plastid	38.32	42.71
VIT_12s0035g00920.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	42.99	38.49
Os06t0352200-01	Rice	plasma membrane, plastid	44.86	37.94
VIT_14s0108g00920.t01	Wine grape	plastid	35.51	35.51
VIT_18s0086g00700.t01	Wine grape	plasma membrane	34.11	34.27

Protein Annotations

EntrezGene:100245474	wikigene:100245474	MapMan:35.1	ProteinID:CBI21903	ProteinID:CBI21903.3	InterPro:DMP
UniProt:E0CTI8	EMBL:FN595235	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005773
GO:GO:0005783	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0010256	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	EntrezGene:LOC100245474	wikigene:LOC100245474	PFAM:PF05078	PANTHER:PTHR31621
PANTHER:PTHR31621:SF6	TMHMM:TMhelix	UniParc:UPI00019843BA	ArrayExpress:VIT_12s0028g03070	EnsemblPlantsGene:VIT_12s0028g03070	EnsemblPlants:VIT_12s0028g03070.t01
RefSeq:XP_002275299	RefSeq:XP_002275299.1	:	:	:	:

Description

No Description!

Coordinates

chr12:+:3836442..3837086

Molecular Weight (calculated)

23624.3 Da

IEP (calculated)

8.973

GRAVY (calculated)

0.372

Length

214 amino acids

Sequence
(BLAST)

001: MEVKVQTDEE VQRVIEQQLQ PLLEHSPIPE KLMKTPLQRF IRKTFKGTAH LSNLLPTGTV LGFQMFSPIL TNKGHCLTSA THSLTLGLLA ACCASCFILS
101: FTDSFRDAKG KVRYGLATSR GLWVIDGSVT LAPDVAAGYR LKFIDFVHAF MSIVVFAAVA LFDQNIVKCF CPMPSEETKK LLVAVPLWTG VVCCLFFVVF
201: PSKRHGIGFP LSRG

Best Arabidopsis Sequence Match ( AT4G28485.2 )
(BLAST)

001: MEETKQSLIA SLPSAPRKPK SKVERVVRKT FKGTAHLSNL LPTGSVMSFQ IMCPVLTHQG QCPTITSRWL TCFLVSLCAI SCFLFSFTDS IRDPNGKVRY
101: GLATWSGLLV MDGSITLTEE EKEKYKLKIL DFIHAIMSML VFFAVSMFDQ NVTRCLFPVP SEETKEILTS LPFVIGVICG AFFLAFPTRR HGIGSPLTKE

Arabidopsis Description

DMP7Protein DMP7 [Source:UniProtKB/Swiss-Prot;Acc:Q5XV67]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.