CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g03070.t01	Wine grape	plasma membrane	58.94	57.01
GSMUA_Achr4P02720_001	Banana	plasma membrane	54.59	53.55
KRH20387	Soybean	plasma membrane	56.04	53.46
GSMUA_Achr4P10580_001	Banana	cytosol	53.62	53.37
Solyc10g008970.1.1	Tomato	plasma membrane	56.04	52.97
KRH21356	Soybean	cytosol, peroxisome, plasma membrane	52.17	51.18
PGSC0003DMT400035732	Potato	plasma membrane	55.07	51.12
Solyc12g005490.1.1	Tomato	plasma membrane	55.07	50.67
TraesCS3B01G273700.1	Wheat	cytosol, peroxisome, plasma membrane	44.93	49.73
KXG33079	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	47.83	47.6
Zm00001d011558_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	47.34	47.12
TraesCS3D01G245600.1	Wheat	cytosol, peroxisome, plasma membrane	46.86	45.33
TraesCS3A01G245800.1	Wheat	cytosol, peroxisome, plasma membrane	46.86	44.5
Os05t0562800-02	Rice	plastid	50.72	44.12
KRH50120	Soybean	peroxisome	43.96	43.75
HORVU1Hr1G087380.1	Barley	mitochondrion	50.72	42.86
KRH20960	Soybean	plastid	37.68	38.24
Os06t0352200-01	Rice	plasma membrane, plastid	45.89	37.55
KRG98790	Soybean	plasma membrane	35.75	34.58
KRG98781	Soybean	plasma membrane	35.75	34.58
KRH50952	Soybean	plasma membrane, plastid	35.75	33.33
KRH70214	Soybean	peroxisome	34.78	33.03
KRH02164	Soybean	endoplasmic reticulum	33.33	33.01
KRH50953	Soybean	plastid	34.3	32.27
KRH08569	Soybean	peroxisome	33.82	31.96

Protein Annotations

EntrezGene:100796945	MapMan:35.1	EMBL:ACUP02004065	InterPro:DMP	EnsemblPlantsGene:GLYMA_06G288800	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005783	GO:GO:0008150
GO:GO:0009705	GO:GO:0009987	GO:GO:0010256	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
UniProt:I1KEY1	EnsemblPlants:KRH55890	ProteinID:KRH55890	ProteinID:KRH55890.1	PFAM:PF05078	PANTHER:PTHR31621
PANTHER:PTHR31621:SF6	TMHMM:TMhelix	UniParc:UPI0002339A0D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:47745025..47745648

Molecular Weight (calculated)

22963.4 Da

IEP (calculated)

9.116

GRAVY (calculated)

0.292

Length

207 amino acids

Sequence
(BLAST)

001: MDVHVTTQEP LLENAPTPLL LPQKTPKTPT QRTMRKAFKG TSHLAKLLPT GTVLIFQTLS PLFTHQGQCQ TLTSKTMTTC LLTLCSISCF LLSFTDSFRD
101: ERGKVRYGVA SLKGLWVLDA SIRVPVDEAE KYRLRFIDFF HAFMSILVFL AVALLDGSVV SCFFPKPSEE AKELLVTLPI GIGIVCSVLF VAFPSQRHGI
201: GFPLSRN

Best Arabidopsis Sequence Match ( AT4G28485.2 )
(BLAST)

001: MEETKQSLIA SLPSAPRKPK SKVERVVRKT FKGTAHLSNL LPTGSVMSFQ IMCPVLTHQG QCPTITSRWL TCFLVSLCAI SCFLFSFTDS IRDPNGKVRY
101: GLATWSGLLV MDGSITLTEE EKEKYKLKIL DFIHAIMSML VFFAVSMFDQ NVTRCLFPVP SEETKEILTS LPFVIGVICG AFFLAFPTRR HGIGSPLTKE

Arabidopsis Description

DMP7Protein DMP7 [Source:UniProtKB/Swiss-Prot;Acc:Q5XV67]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.