Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 6
- endoplasmic reticulum 6
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28245 | Canola | extracellular | 97.44 | 97.44 |
| CDY23278 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 94.87 | 94.87 |
| CDY51476 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 94.87 | 94.87 |
| AT4G31130.1 | Thale cress | endoplasmic reticulum, extracellular | 92.31 | 92.31 |
| Solyc08g006000.2.1 | Tomato | plastid | 65.64 | 65.64 |
| PGSC0003DMT400038484 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 65.64 | 65.64 |
| KRH16093 | Soybean | extracellular | 67.69 | 64.39 |
| Solyc08g074400.1.1 | Tomato | extracellular, plasma membrane | 60.0 | 63.93 |
| KRH52558 | Soybean | extracellular | 62.56 | 63.87 |
| KRG88894 | Soybean | extracellular | 66.15 | 63.24 |
| KRH61896 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 63.08 | 63.08 |
| KRH05017 | Soybean | extracellular | 30.77 | 59.41 |
| PGSC0003DMT400076027 | Potato | extracellular, plasma membrane | 54.87 | 54.04 |
| EES17623 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 51.79 | 51.79 |
| TraesCS1A01G055200.1 | Wheat | extracellular, plasma membrane, vacuole | 52.31 | 51.52 |
| TraesCS1D01G055900.1 | Wheat | extracellular, plasma membrane, vacuole | 51.79 | 51.01 |
| TraesCS1B01G072000.1 | Wheat | extracellular, plasma membrane, vacuole | 50.77 | 50.0 |
| Zm00001d035519_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 49.23 | 48.98 |
| GSMUA_Achr9P04190_001 | Banana | endoplasmic reticulum, plasma membrane | 47.69 | 48.95 |
| GSMUA_Achr6P33170_001 | Banana | plasma membrane | 47.69 | 46.5 |
| HORVU1Hr1G010940.3 | Barley | peroxisome | 51.28 | 41.84 |
| GSMUA_Achr8P02030_001 | Banana | extracellular | 42.56 | 41.5 |
| GSMUA_Achr8P02050_001 | Banana | extracellular | 42.56 | 41.5 |
| GSMUA_Achr8P02010_001 | Banana | extracellular | 42.56 | 41.5 |
| Os05t0465400-01 | Rice | endoplasmic reticulum, plasma membrane | 40.0 | 40.41 |
| GSMUA_Achr6P15460_001 | Banana | cytosol, golgi, plasma membrane | 50.26 | 40.0 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 41.54 | 39.71 |
| VIT_04s0008g03100.t01 | Wine grape | plasma membrane | 63.59 | 32.55 |
| TraesCS3A01G539400.1 | Wheat | extracellular, plasma membrane, vacuole | 33.33 | 30.09 |
| TraesCS3B01G605200.1 | Wheat | vacuole | 32.82 | 29.63 |
| TraesCS3D01G544900.1 | Wheat | vacuole | 32.82 | 29.63 |
Protein Annotations
| EnsemblPlants:CDX68723 | EnsemblPlantsGene:GSBRNA2T00130414001 | GO:A0A078C0N6 | InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF9 |
| PFAM:PF06749 | ProteinID:CDX68723 | ProteinID:CDX68723.1 | SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix |
| UniParc:UPI0004EE776B | MapMan:35.2 | : | : | : | : |
Description
BnaC01g07300D
Coordinates
chrLK031789:-:969774..971211
Molecular Weight (calculated)
20904.4 Da
IEP (calculated)
8.328
GRAVY (calculated)
0.372
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVTMKHMSL IVSLFGVLSF ILGVIAENKK PASGTPINGK GVVICKYPSD PTVALSYLSA AFLLACTVAG YKSLFISYKG RSVPNSVLFK STSFSVFFNI
101: ALITSGLALS LLLWPTITEQ LHLTRNVHRN LETSCPTAKT GLLGGGAFVS LDSCLFWLVA LILADNARED HFDEADNRNG DGNSSSRDVN LKIDA
101: ALITSGLALS LLLWPTITEQ LHLTRNVHRN LETSCPTAKT GLLGGGAFVS LDSCLFWLVA LILADNARED HFDEADNRNG DGNSSSRDVN LKIDA
001: MAVSMKQMSL VVSALGVLSF VLGVIAENKK PASGTPISGK GVVICKYPSD PTVALGYLSA AFLLACTVAG YKSLFISYKG KSVPNSVLFK STSFSVFFNI
101: ALITSGLALS LLLWPTITEQ LHLTRNVHRN LETSCPTAKT GLLGGGAFVS LDSCLFWLVA LMLADNARED HFDEVESRSI DGNSSSRDVN LKIDA
101: ALITSGLALS LLLWPTITEQ LHLTRNVHRN LETSCPTAKT GLLGGGAFVS LDSCLFWLVA LMLADNARED HFDEVESRSI DGNSSSRDVN LKIDA
Arabidopsis Description
At4g31130 [Source:UniProtKB/TrEMBL;Acc:Q9M089]
SUBAcon: [extracellular,endoplasmic reticulum]
SUBAcon: [extracellular,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.