Factsheet for Solyc08g006000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038484	Potato	endoplasmic reticulum, extracellular, plasma membrane	96.41	96.41
Solyc08g074400.1.1	Tomato	extracellular, plasma membrane	71.79	76.5
AT4G31130.1	Thale cress	endoplasmic reticulum, extracellular	67.69	67.69
Bra011248.1-P	Field mustard	extracellular	66.67	66.67
CDY28245	Canola	extracellular	66.67	66.67
Bra010253.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	65.64	65.64
CDX68723	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.64	65.64
CDY23278	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.64	65.64
CDY51476	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.64	65.64
KRH05017	Soybean	extracellular	32.82	63.37
KRH52558	Soybean	extracellular	60.51	61.78
KRG88894	Soybean	extracellular	64.62	61.76
KRH16093	Soybean	extracellular	64.62	61.46
KRH61896	Soybean	endoplasmic reticulum, extracellular, plasma membrane	59.49	59.49
EES17623	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	52.82	52.82
TraesCS1D01G055900.1	Wheat	extracellular, plasma membrane, vacuole	52.82	52.02
TraesCS1A01G055200.1	Wheat	extracellular, plasma membrane, vacuole	52.31	51.52
TraesCS1B01G072000.1	Wheat	extracellular, plasma membrane, vacuole	51.79	51.01
GSMUA_Achr9P04190_001	Banana	endoplasmic reticulum, plasma membrane	49.23	50.53
Zm00001d035519_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	50.77	50.51
GSMUA_Achr6P33170_001	Banana	plasma membrane	50.26	49.0
Os05t0465400-01	Rice	endoplasmic reticulum, plasma membrane	43.59	44.04
GSMUA_Achr8P02010_001	Banana	extracellular	45.13	44.0
GSMUA_Achr8P02030_001	Banana	extracellular	45.13	44.0
GSMUA_Achr8P02050_001	Banana	extracellular	45.13	44.0
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane, vacuole	45.64	43.63
HORVU1Hr1G010940.3	Barley	peroxisome	51.79	42.26
GSMUA_Achr6P15460_001	Banana	cytosol, golgi, plasma membrane	51.28	40.82
VIT_04s0008g03100.t01	Wine grape	plasma membrane	70.77	36.22
TraesCS3A01G539400.1	Wheat	extracellular, plasma membrane, vacuole	33.33	30.09
TraesCS3B01G605200.1	Wheat	vacuole	32.82	29.63
TraesCS3D01G544900.1	Wheat	vacuole	31.79	28.7

Protein Annotations

EnsemblPlants:Solyc08g006000.2.1	EnsemblPlantsGene:Solyc08g006000.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DUF1218
PANTHER:PTHR31769	PANTHER:PTHR31769:SF9	PFAM:PF06749	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI000276BC62	UniProt:K4CI89	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr8:-:763883..768964

Molecular Weight (calculated)

20842.5 Da

IEP (calculated)

7.501

GRAVY (calculated)

0.443

Length

195 amino acids

Sequence
(BLAST)

001: MAIGMKQMSM IIATLGVLSF IFGVIAENKK PAAGTAISGK GVVICKYKSD PTVALGYLSF VFLAASSVAG FLSLFYPYQG KSVPQAALLR NTSFLVFLNI
101: ALGTTGLAAT LLLWPTITEQ LHITRNIHHN LQTDCPTAKT GLLGGGAFLS LDSALFWLVA LMLADNARED YFQETDIKGE PKASYADDEI IKTSA

Best Arabidopsis Sequence Match ( AT4G31130.1 )
(BLAST)

001: MAVSMKQMSL VVSALGVLSF VLGVIAENKK PASGTPISGK GVVICKYPSD PTVALGYLSA AFLLACTVAG YKSLFISYKG KSVPNSVLFK STSFSVFFNI
101: ALITSGLALS LLLWPTITEQ LHLTRNVHRN LETSCPTAKT GLLGGGAFVS LDSCLFWLVA LMLADNARED HFDEVESRSI DGNSSSRDVN LKIDA

Arabidopsis Description

At4g31130 [Source:UniProtKB/TrEMBL;Acc:Q9M089]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.