Factsheet for GSMUA_Achr6P15460_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G055900.1	Wheat	extracellular, plasma membrane, vacuole	57.96	71.72
TraesCS1A01G055200.1	Wheat	extracellular, plasma membrane, vacuole	57.96	71.72
GSMUA_Achr9P04190_001	Banana	endoplasmic reticulum, plasma membrane	55.51	71.58
TraesCS1B01G072000.1	Wheat	extracellular, plasma membrane, vacuole	57.14	70.71
EES17623	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	55.51	69.74
Zm00001d035519_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	55.51	69.39
GSMUA_Achr6P33170_001	Banana	plasma membrane	56.33	69.0
GSMUA_Achr8P02010_001	Banana	extracellular	51.84	63.5
GSMUA_Achr8P02050_001	Banana	extracellular	51.84	63.5
GSMUA_Achr8P02030_001	Banana	extracellular	51.84	63.5
HORVU1Hr1G010940.3	Barley	peroxisome	59.59	61.09
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane, vacuole	49.39	59.31
KRH61896	Soybean	endoplasmic reticulum, extracellular, plasma membrane	43.27	54.36
KRH52558	Soybean	extracellular	41.63	53.4
CDY28245	Canola	extracellular	41.22	51.79
Bra011248.1-P	Field mustard	extracellular	41.22	51.79
Solyc08g006000.2.1	Tomato	plastid	40.82	51.28
PGSC0003DMT400038484	Potato	endoplasmic reticulum, extracellular, plasma membrane	40.82	51.28
Bra010253.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	40.41	50.77
CDY23278	Canola	endoplasmic reticulum, extracellular, plasma membrane	40.41	50.77
AT4G31130.1	Thale cress	endoplasmic reticulum, extracellular	40.41	50.77
Solyc08g074400.1.1	Tomato	extracellular, plasma membrane	37.55	50.27
CDX68723	Canola	endoplasmic reticulum, extracellular, plasma membrane	40.0	50.26
CDY51476	Canola	endoplasmic reticulum, extracellular, plasma membrane	39.59	49.74
Os05t0465400-01	Rice	endoplasmic reticulum, plasma membrane	37.55	47.67
KRG88894	Soybean	extracellular	38.78	46.57
KRH16093	Soybean	extracellular	38.78	46.34
VIT_04s0008g03090.t01	Wine grape	extracellular	37.55	45.1
KRH05017	Soybean	extracellular	17.96	43.56
PGSC0003DMT400076027	Potato	extracellular, plasma membrane	35.1	43.43
TraesCS3B01G605200.1	Wheat	vacuole	35.1	39.81
TraesCS3D01G544900.1	Wheat	vacuole	34.69	39.35
TraesCS3A01G539400.1	Wheat	extracellular, plasma membrane, vacuole	34.29	38.89
VIT_04s0008g03100.t01	Wine grape	plasma membrane	41.22	26.51

Protein Annotations

EnsemblPlants:GSMUA_Achr6P15460_001	EnsemblPlants:GSMUA_Achr6T15460_001	EnsemblPlantsGene:GSMUA_Achr6G15460_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF9	PFAM:PF06749	SEG:seg	TMHMM:TMhelix
UniParc:UPI000295232F	UniProt:M0T794	MapMan:35.2	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G15460_001]

Coordinates

chr6:-:10307022..10310874

Molecular Weight (calculated)

26691.5 Da

IEP (calculated)

6.499

GRAVY (calculated)

0.329

Length

245 amino acids

Sequence
(BLAST)

001: MDYFVIDAQG SRRYYFVVYL LEVSPAPCDR RLKDPRGCWG IGLMALNQTT KIALAVAFFG SLSFIFGVIA ENKKPPYGTP IKGKDVVICK FPSDPTVALG
101: SLSVVTLFLA AVIGHIAVYY PYKGKTVPNQ ALFCSTTLVV FFMIAEVVSI LALGMMMWAT ITEGLSRSRN VHHDLDTECA TAKTGLFGGA AFLALDASLF
201: WLVCQMLTLN ARADYLDEDD PKGEYGQVYA TEFDSNGAGH PAPKV

Best Arabidopsis Sequence Match ( AT4G31130.1 )
(BLAST)

001: MAVSMKQMSL VVSALGVLSF VLGVIAENKK PASGTPISGK GVVICKYPSD PTVALGYLSA AFLLACTVAG YKSLFISYKG KSVPNSVLFK STSFSVFFNI
101: ALITSGLALS LLLWPTITEQ LHLTRNVHRN LETSCPTAKT GLLGGGAFVS LDSCLFWLVA LMLADNARED HFDEVESRSI DGNSSSRDVN LKIDA

Arabidopsis Description

At4g31130 [Source:UniProtKB/TrEMBL;Acc:Q9M089]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.