Factsheet for VIT_04s0008g03090.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G055200.1	Wheat	extracellular, plasma membrane, vacuole	46.57	47.98
TraesCS1D01G055900.1	Wheat	extracellular, plasma membrane, vacuole	46.57	47.98
GSMUA_Achr9P04190_001	Banana	endoplasmic reticulum, plasma membrane	44.61	47.89
EES17623	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	45.59	47.69
TraesCS1B01G072000.1	Wheat	extracellular, plasma membrane, vacuole	46.08	47.47
GSMUA_Achr6P33170_001	Banana	plasma membrane	43.63	44.5
Zm00001d035519_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	42.65	44.39
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane, vacuole	40.69	40.69
HORVU1Hr1G010940.3	Barley	peroxisome	47.55	40.59
GSMUA_Achr8P02010_001	Banana	extracellular	39.71	40.5
GSMUA_Achr8P02030_001	Banana	extracellular	39.71	40.5
GSMUA_Achr8P02050_001	Banana	extracellular	39.71	40.5
Os05t0465400-01	Rice	endoplasmic reticulum, plasma membrane	38.24	40.41
GSMUA_Achr6P15460_001	Banana	cytosol, golgi, plasma membrane	45.1	37.55
VIT_04s0008g03100.t01	Wine grape	plasma membrane	55.88	29.92
TraesCS3D01G544900.1	Wheat	vacuole	29.9	28.24
TraesCS3A01G539400.1	Wheat	extracellular, plasma membrane, vacuole	29.41	27.78
TraesCS3B01G605200.1	Wheat	vacuole	29.41	27.78

Protein Annotations

EntrezGene:100244029	wikigene:100244029	MapMan:35.2	ProteinID:CCB46682	ProteinID:CCB46682.1	InterPro:DUF1218
UniProt:F6H2X1	EMBL:FN595231	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100244029
wikigene:LOC100244029	PFAM:PF06749	PANTHER:PTHR31769	PANTHER:PTHR31769:SF9	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI00015C855B	ArrayExpress:VIT_04s0008g03090	EnsemblPlantsGene:VIT_04s0008g03090	EnsemblPlants:VIT_04s0008g03090.t01	RefSeq:XP_002281023	RefSeq:XP_002281023.1
RefSeq:XP_010648469.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:2562745..2563700

Molecular Weight (calculated)

21819.6 Da

IEP (calculated)

6.085

GRAVY (calculated)

0.514

Length

204 amino acids

Sequence
(BLAST)

001: MAVSIKLTST IVVALGLVSF IFGVVAENKK PPAGTPVPGK GVVICQYPSA PTVALGFLAT VFTVIQTAVG FLSLFYPYKG RAIPKGAFLE STRWVIFVNI
101: ALATAGLGFA FLLWPTVTEH YHLSRNVHHD LETQCPTAKT GLLGGGAFLA LDSSLFWLIC LMLTGNVRED FFEEVDQDYR GDGQVIPFDD YAGAPGNVTT
201: GVMA

Best Arabidopsis Sequence Match ( AT4G31130.1 )
(BLAST)

001: MAVSMKQMSL VVSALGVLSF VLGVIAENKK PASGTPISGK GVVICKYPSD PTVALGYLSA AFLLACTVAG YKSLFISYKG KSVPNSVLFK STSFSVFFNI
101: ALITSGLALS LLLWPTITEQ LHLTRNVHRN LETSCPTAKT GLLGGGAFVS LDSCLFWLVA LMLADNARED HFDEVESRSI DGNSSSRDVN LKIDA

Arabidopsis Description

At4g31130 [Source:UniProtKB/TrEMBL;Acc:Q9M089]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.