CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, vacuole, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84320	Canola	extracellular, plasma membrane, plastid, vacuole	96.15	96.15
CDY17241	Canola	cytosol, plasma membrane, plastid, vacuole	95.8	95.8
CDY17243	Canola	extracellular, plasma membrane, plastid, vacuole	95.1	95.1
AT2G34390.1	Thale cress	plasma membrane	86.71	86.11
AT2G29870.1	Thale cress	plastid	39.86	82.01
CDX98596	Canola	cytosol, peroxisome, plasma membrane	53.85	51.68
CDY01565	Canola	cytosol, peroxisome, plasma membrane	53.85	51.68
CDX78905	Canola	cytosol, peroxisome, plasma membrane	53.5	51.52
CDX99411	Canola	cytosol, peroxisome, plasma membrane	52.1	50.17
CDY72002	Canola	plastid	13.64	45.88
CDY51581	Canola	plastid	11.54	45.83
CDY16269	Canola	plastid	11.19	44.44
CDY35532	Canola	endoplasmic reticulum, extracellular, vacuole	43.01	43.77
CDY71538	Canola	extracellular, plasma membrane, vacuole	34.62	43.42
CDY41749	Canola	plasma membrane	44.41	42.91
PGSC0003DMT400073240	Potato	cytosol, plasma membrane, vacuole	26.92	42.54
Solyc06g073590.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	50.35	41.74
CDX99688	Canola	plasma membrane	40.56	40.99
PGSC0003DMT400015246	Potato	endoplasmic reticulum, peroxisome, plasma membrane	49.65	40.92
CDY65403	Canola	plasma membrane	40.21	40.64
CDY01700	Canola	plasma membrane	39.86	40.28
CDX74558	Canola	plasma membrane	39.86	40.28
CDX84114	Canola	plasma membrane	46.85	40.12
TraesCS7A01G355000.1	Wheat	peroxisome	38.46	39.43
TraesCS7B01G272700.1	Wheat	plasma membrane	38.46	39.43
TraesCS7D01G367800.1	Wheat	golgi, peroxisome, plasma membrane	38.46	39.43
CDY29921	Canola	vacuole	42.66	38.73
CDY35531	Canola	vacuole	42.31	38.66
CDY29922	Canola	peroxisome, plasma membrane, vacuole	44.06	38.41
CDX99689	Canola	extracellular	22.38	37.87
Os06t0552700-01	Rice	cytosol, peroxisome, plastid	35.66	37.36
Solyc02g071910.1.1	Tomato	endoplasmic reticulum, extracellular	29.37	36.36
KXG20157	Sorghum	golgi, nucleus, plasma membrane	36.71	36.08
CDX94261	Canola	plasma membrane	37.06	35.22
CDY25253	Canola	plasma membrane	37.06	35.22
CDY39946	Canola	cytosol, peroxisome, plasma membrane	37.41	35.08
CDX87340	Canola	cytosol, peroxisome, plasma membrane	37.41	35.08
CDY66949	Canola	cytosol, peroxisome, plasma membrane	37.41	35.08
CDY53224	Canola	cytosol, peroxisome, plasma membrane	37.41	35.08
CDY05100	Canola	plasma membrane	36.71	34.88
CDX90757	Canola	plasma membrane	36.71	34.88
CDX67591	Canola	plasma membrane	36.71	34.88
Zm00001d046303_P001	Maize	golgi, peroxisome, plasma membrane	36.36	32.81
CDY35528	Canola	cytosol	14.69	31.11
CDY05231	Canola	plasma membrane	29.37	30.88
CDY27709	Canola	plasma membrane	29.37	30.88
CDY69767	Canola	plasma membrane	27.62	29.59

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	GO:A0A078D4Q3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	EnsemblPlants:CDX84321
ProteinID:CDX84321	ProteinID:CDX84321.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00141431001
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF155	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0004EE4373
SEG:seg	:	:	:	:	:

Description

BnaC04g10830D

Coordinates

chrLK031836:+:1792420..1793596

Molecular Weight (calculated)

30317.3 Da

IEP (calculated)

8.950

GRAVY (calculated)

0.588

Length

286 amino acids

Sequence
(BLAST)

001: MDDISVGKSN HGNVVVLNIQ APPVSKTSLP SSPPTSPPLL SVHFLQKLIA ELVGTYYLIF AGCAAIAVNA QHNNVVTLVG IAVVWGLVIM VLVYSLGHIS
101: AHFNPAVTIA LASCKRFPLY QLPAYLTVQV IGSTLASATL RILFDLNNDV CSKKHDVFLG SSPSGTDLQA FVMEFIITGF LMIVVCAFTT SKRTTKELEG
201: LIIGATVTLN VIFAGEVSGA SMNPARSLGP ALVWGCYKGI WIYLVAPTLG AVSAALIHKL LPATQKANSE FSKTGSSHKR VTDLPL

Best Arabidopsis Sequence Match ( AT2G34390.1 )
(BLAST)

001: MDDISVSKSN HGNVVVLNIK ASSLADTSLP SNKHESSSPP LLSVHFLQKL LAELVGTYYL IFAGCAAIAV NAQHNHVVTL VGIAVVWGIV IMVLVYCLGH
101: LSAHFNPAVT LALASSQRFP LNQVPAYITV QVIGSTLASA TLRLLFDLNN DVCSKKHDVF LGSSPSGSDL QAFVMEFIIT GFLMLVVCAV TTTKRTTEEL
201: EGLIIGATVT LNVIFAGEVS GASMNPARSI GPALVWGCYK GIWIYLLAPT LGAVSGALIH KMLPSIQNAE PEFSKTGSSH KRVTDLPL

Arabidopsis Description

NIP2-1Aquaporin NIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W037]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.