CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular, vacuole

Predictor Summary:

plastid 2
mitochondrion 1
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005428.1-P	Field mustard	extracellular, plasma membrane, plastid, vacuole	99.65	99.65
CDX84320	Canola	extracellular, plasma membrane, plastid, vacuole	98.25	98.25
CDY17241	Canola	cytosol, plasma membrane, plastid, vacuole	95.45	95.45
CDX84321	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	95.1	95.1
AT2G34390.1	Thale cress	plasma membrane	86.01	85.42
AT2G29870.1	Thale cress	plastid	39.51	81.3
CDY01565	Canola	cytosol, peroxisome, plasma membrane	54.2	52.01
CDX98596	Canola	cytosol, peroxisome, plasma membrane	54.2	52.01
CDX78905	Canola	cytosol, peroxisome, plasma membrane	53.85	51.85
CDX99411	Canola	cytosol, peroxisome, plasma membrane	52.45	50.51
CDY35532	Canola	endoplasmic reticulum, extracellular, vacuole	43.01	43.77
CDY72002	Canola	plastid	12.94	43.53
CDY71538	Canola	extracellular, plasma membrane, vacuole	34.62	43.42
CDY41749	Canola	plasma membrane	44.76	43.24
CDY51581	Canola	plastid	10.84	43.06
PGSC0003DMT400073240	Potato	cytosol, plasma membrane, vacuole	26.92	42.54
Solyc06g073590.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	51.05	42.32
CDY16269	Canola	plastid	10.49	41.67
PGSC0003DMT400015246	Potato	endoplasmic reticulum, peroxisome, plasma membrane	50.35	41.5
CDX99688	Canola	plasma membrane	40.21	40.64
TraesCS7A01G355000.1	Wheat	peroxisome	39.51	40.5
TraesCS7D01G367800.1	Wheat	golgi, peroxisome, plasma membrane	39.51	40.5
TraesCS7B01G272700.1	Wheat	plasma membrane	39.51	40.5
CDX84114	Canola	plasma membrane	47.2	40.42
CDX74558	Canola	plasma membrane	39.86	40.28
CDY65403	Canola	plasma membrane	39.86	40.28
CDY01700	Canola	plasma membrane	39.86	40.28
CDY29922	Canola	peroxisome, plasma membrane, vacuole	44.06	38.41
CDY29921	Canola	vacuole	42.31	38.41
CDY35531	Canola	vacuole	41.96	38.34
Os06t0552700-01	Rice	cytosol, peroxisome, plastid	36.36	38.1
CDX99689	Canola	extracellular	22.38	37.87
Solyc02g071910.1.1	Tomato	endoplasmic reticulum, extracellular	29.72	36.8
KXG20157	Sorghum	golgi, nucleus, plasma membrane	37.06	36.43
CDY66949	Canola	cytosol, peroxisome, plasma membrane	38.46	36.07
CDY39946	Canola	cytosol, peroxisome, plasma membrane	38.46	36.07
CDY53224	Canola	cytosol, peroxisome, plasma membrane	38.46	36.07
CDX87340	Canola	cytosol, peroxisome, plasma membrane	38.46	36.07
CDY25253	Canola	plasma membrane	37.06	35.22
CDX94261	Canola	plasma membrane	37.06	35.22
CDX90757	Canola	plasma membrane	36.71	34.88
CDX67591	Canola	plasma membrane	36.71	34.88
CDY05100	Canola	plasma membrane	36.36	34.55
Zm00001d046303_P001	Maize	golgi, peroxisome, plasma membrane	37.06	33.44
CDY27709	Canola	plasma membrane	30.07	31.62
CDY05231	Canola	plasma membrane	29.72	31.25
CDY35528	Canola	cytosol	14.34	30.37
CDY69767	Canola	plasma membrane	27.62	29.59

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	GO:A0A078FY08	UniProt:A0A078FY08	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
EnsemblPlants:CDY17243	ProteinID:CDY17243	ProteinID:CDY17243.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00095321001	InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF155	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix
UniParc:UPI0004EEF2AE	SEG:seg	:	:	:	:

Description

BnaA05g09450DBnaA05g09450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FY08]

Coordinates

chrLK032071:-:623160..624679

Molecular Weight (calculated)

30251.2 Da

IEP (calculated)

8.223

GRAVY (calculated)

0.619

Length

286 amino acids

Sequence
(BLAST)

001: MDDISVSKSN HGNVVVLNIQ APPVSKTSFP SSPSTSPPLL SVHFLQKLIA ELVGTYYLIF AGCAAIAVNA QHNNVVTLVG IAVVWGLVVM VLVYSLGHIS
101: AHFNPAVTIA LASCKSFPLY QLPAYLIVQV IGSTLASATL RLLFDLNNDV CSKKHDVFLG SSPSGTDLQA FGMEFIITGF LMIVVCAVTT SKRTSEELEG
201: LIIGATVTLN VIFAGEVSGA SMNPARSLGP ALVWGCYKGI WIYLLAPTLG AVLAALIHKL LPATQKANSE FSKTGSSHKR ITDLPL

Best Arabidopsis Sequence Match ( AT2G34390.1 )
(BLAST)

001: MDDISVSKSN HGNVVVLNIK ASSLADTSLP SNKHESSSPP LLSVHFLQKL LAELVGTYYL IFAGCAAIAV NAQHNHVVTL VGIAVVWGIV IMVLVYCLGH
101: LSAHFNPAVT LALASSQRFP LNQVPAYITV QVIGSTLASA TLRLLFDLNN DVCSKKHDVF LGSSPSGSDL QAFVMEFIIT GFLMLVVCAV TTTKRTTEEL
201: EGLIIGATVT LNVIFAGEVS GASMNPARSI GPALVWGCYK GIWIYLLAPT LGAVSGALIH KMLPSIQNAE PEFSKTGSSH KRVTDLPL

Arabidopsis Description

NIP2-1Aquaporin NIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W037]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.