Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65403 | Canola | plasma membrane | 90.11 | 90.11 |
| CDY71538 | Canola | extracellular, plasma membrane, vacuole | 71.73 | 89.04 |
| CDX99689 | Canola | extracellular | 50.53 | 84.62 |
| CDY01700 | Canola | plasma membrane | 81.98 | 81.98 |
| CDX74558 | Canola | plasma membrane | 81.27 | 81.27 |
| AT5G37820.2 | Thale cress | plastid | 85.16 | 75.55 |
| CDY69767 | Canola | plasma membrane | 71.02 | 75.28 |
| PGSC0003DMT400078773 | Potato | cytoskeleton, cytosol, plasma membrane | 66.08 | 70.04 |
| Solyc02g091420.2.1 | Tomato | plasma membrane | 65.02 | 68.91 |
| KRH73019 | Soybean | cytosol, peroxisome, plasma membrane | 56.54 | 61.3 |
| KRH15118 | Soybean | plasma membrane | 55.83 | 60.54 |
| CDX78905 | Canola | cytosol, peroxisome, plasma membrane | 54.06 | 51.52 |
| CDX98596 | Canola | cytosol, peroxisome, plasma membrane | 53.36 | 50.67 |
| CDY01565 | Canola | cytosol, peroxisome, plasma membrane | 53.36 | 50.67 |
| CDY72002 | Canola | plastid | 15.19 | 50.59 |
| CDX99411 | Canola | cytosol, peroxisome, plasma membrane | 53.0 | 50.51 |
| Solyc02g063310.2.1 | Tomato | cytosol, extracellular, vacuole | 22.61 | 46.72 |
| CDY51581 | Canola | plastid | 11.66 | 45.83 |
| CDY16269 | Canola | plastid | 11.66 | 45.83 |
| CDY41749 | Canola | plasma membrane | 46.29 | 44.26 |
| CDY35532 | Canola | endoplasmic reticulum, extracellular, vacuole | 42.4 | 42.7 |
| CDY17241 | Canola | cytosol, plasma membrane, plastid, vacuole | 41.34 | 40.91 |
| CDX84320 | Canola | extracellular, plasma membrane, plastid, vacuole | 41.34 | 40.91 |
| CDX84321 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 40.99 | 40.56 |
| CDY17243 | Canola | extracellular, plasma membrane, plastid, vacuole | 40.64 | 40.21 |
| VIT_14s0006g01560.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 16.61 | 40.17 |
| CDX84114 | Canola | plasma membrane | 47.35 | 40.12 |
| CDX67591 | Canola | plasma membrane | 42.05 | 39.53 |
| CDY05100 | Canola | plasma membrane | 41.34 | 38.87 |
| CDX90757 | Canola | plasma membrane | 41.34 | 38.87 |
| CDY25253 | Canola | plasma membrane | 40.99 | 38.54 |
| CDX94261 | Canola | plasma membrane | 40.99 | 38.54 |
| CDY39946 | Canola | cytosol, peroxisome, plasma membrane | 41.34 | 38.36 |
| CDX87340 | Canola | cytosol, peroxisome, plasma membrane | 41.34 | 38.36 |
| CDY35531 | Canola | vacuole | 42.4 | 38.34 |
| CDY29921 | Canola | vacuole | 42.4 | 38.1 |
| CDY53224 | Canola | cytosol, peroxisome, plasma membrane | 40.99 | 38.03 |
| CDY66949 | Canola | cytosol, peroxisome, plasma membrane | 40.28 | 37.38 |
| CDY35528 | Canola | cytosol | 17.31 | 36.3 |
| CDY29922 | Canola | peroxisome, plasma membrane, vacuole | 42.05 | 36.28 |
| CDY27709 | Canola | plasma membrane | 34.63 | 36.03 |
| CDY05231 | Canola | plasma membrane | 34.63 | 36.03 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | GO:A0A078EK16 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | EnsemblPlants:CDX99688 |
| ProteinID:CDX99688 | ProteinID:CDX99688.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00108252001 | InterPro:IPR023271 |
| InterPro:MIP | PFAM:PF00230 | PRINTS:PR00783 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF185 | SUPFAM:SSF81338 |
| TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0004EF2320 | SEG:seg | : | : |
Description
BnaC04g34450D
Coordinates
chrLK031912:-:1166904..1168153
Molecular Weight (calculated)
30034.1 Da
IEP (calculated)
8.114
GRAVY (calculated)
0.696
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSHGEGIEE EQISRIEKGI EKDCHGGIET IICTSPSIVC LTQKLIAELI GTYFIIFSGC GVVVVNVLYG GKVTFPGICV TWGLIVMVMI YSVGHISGAH
101: FNPAVTICFA IFRRFPWYQV PSYIGAQLAG SLLASLTLRL MFKVTPEAFF GTTPADSAAR ALVSEIIISF LLMFVISGVA TDSRAIGELA GIAVGMTIIL
201: NVFVAGPISG ASMNPARSLG PAIVMGVYKG IWVYIVGPII GIVAGGFVYN FIRFTDKPLG ELTKSSSFLR KASANNNASS SNS
101: FNPAVTICFA IFRRFPWYQV PSYIGAQLAG SLLASLTLRL MFKVTPEAFF GTTPADSAAR ALVSEIIISF LLMFVISGVA TDSRAIGELA GIAVGMTIIL
201: NVFVAGPISG ASMNPARSLG PAIVMGVYKG IWVYIVGPII GIVAGGFVYN FIRFTDKPLG ELTKSSSFLR KASANNNASS SNS
001: MSSHSDEIEE EQISRIEKGK GKDCQGGIET VICTSPSIVC LTQKLIAEMI GTYFIVFSGC GVVVVNVLYG GTITFPGICV TWGLIVMVMI YSTGHISGAH
101: FNPAVTVTFA IFRRFPWHQV PLYIGAQFAG SLLASLTLRL MFKVTPEAFF GTTPADSPAR ALVAEIIISF LLMFVISGVA TDNRAVGELA GIAVGMTIMV
201: NVFVAGPISG ASMNPARSLG PALVMGVYKH IWVYIVGPVL GVISGGFVYN LIRFTDKPLR ELTKSASFLR AVSPSHKGSS SKT
101: FNPAVTVTFA IFRRFPWHQV PLYIGAQFAG SLLASLTLRL MFKVTPEAFF GTTPADSPAR ALVAEIIISF LLMFVISGVA TDNRAVGELA GIAVGMTIMV
201: NVFVAGPISG ASMNPARSLG PALVMGVYKH IWVYIVGPVL GVISGGFVYN LIRFTDKPLR ELTKSASFLR AVSPSHKGSS SKT
Arabidopsis Description
NIP4-1Putative aquaporin NIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIZ9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.