Factsheet for PGSC0003DMT400078773

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytoskeleton, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, plasma membrane
Any Predictor:	cytoskeleton, cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091420.2.1	Tomato	plasma membrane	93.63	93.63
CDY71538	Canola	extracellular, plasma membrane, vacuole	64.79	75.88
Bra025436.1-P	Field mustard	plastid	51.69	70.05
CDX99689	Canola	extracellular	44.19	69.82
Bra025437.1-P	Field mustard	plasma membrane	70.79	68.48
CDY65403	Canola	plasma membrane	71.16	67.14
Bra025435.1-P	Field mustard	plastid	41.2	67.07
KRH73019	Soybean	cytosol, peroxisome, plasma membrane	65.54	67.05
Bra028151.1-P	Field mustard	plasma membrane	70.79	66.78
CDX74558	Canola	plasma membrane	70.79	66.78
CDY01700	Canola	plasma membrane	70.79	66.78
CDX99688	Canola	plasma membrane	70.04	66.08
KRH15118	Soybean	plasma membrane	64.42	65.9
VIT_14s0006g01540.t01	Wine grape	plasma membrane	68.54	65.12
AT5G37810.1	Thale cress	plasma membrane	68.91	65.02
PGSC0003DMT400078337	Potato	plasma membrane	65.54	64.34
AT5G37820.2	Thale cress	plastid	71.16	59.56
PGSC0003DMT400071510	Potato	plasma membrane	57.68	55.6
PGSC0003DMT400073246	Potato	plasma membrane	58.8	54.14
CDY69767	Canola	plasma membrane	50.94	50.94
PGSC0003DMT400073240	Potato	cytosol, plasma membrane, vacuole	26.97	39.78
PGSC0003DMT400022061	Potato	peroxisome, plasma membrane, plastid, vacuole	38.58	39.62
PGSC0003DMT400035640	Potato	endoplasmic reticulum, extracellular	25.47	38.2
PGSC0003DMT400036625	Potato	plasma membrane	41.95	36.6
PGSC0003DMT400015246	Potato	endoplasmic reticulum, peroxisome, plasma membrane	47.19	36.31
PGSC0003DMT400014852	Potato	cytosol, plasma membrane, plastid	40.07	36.15
PGSC0003DMT400035638	Potato	cytosol, golgi, plasma membrane	16.48	33.33
PGSC0003DMT400084932	Potato	plasma membrane	30.34	28.22

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102595690	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M1D0P6	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400030648	PGSC:PGSC0003DMG400030648	EnsemblPlants:PGSC0003DMT400078773	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF181	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI000295781A
RefSeq:XP_006357778.1	:	:	:	:	:

Description

Aquaporin NIP-type [Source:PGSC_GENE;Acc:PGSC0003DMG400030648]

Coordinates

chr2:-:41835443..41837220

Molecular Weight (calculated)

28191.7 Da

IEP (calculated)

8.452

GRAVY (calculated)

0.640

Length

267 amino acids

Sequence
(BLAST)

001: MVSNKEDQIT QNMEEGNVQV ASNNKVGFCS SPAVVVLGQK LIAEVIGTYF VIFAGCGSVV VNKLYGGTVT FPGICVTWGL IVMVMAYTVG HISGAHFNPA
101: VTITFSVFGR FPWKEVPLYI IAQLMGSTLA SGTLSLMFDV TPQAYFGTVP TGSNVQSLAA EIIISFLLMF VISGVGTDER AIGHVSGIAV GMTITLNVFV
201: AGPISGASMN PARSIGPALV RHVYKGLWVY IVGPIVGTLA GAFVYNLIRS TDKPLNELTK SVSSLRS

Best Arabidopsis Sequence Match ( AT5G37820.2 )
(BLAST)

001: MYKSSSTSKF STHQKFQFLF YFSPNKKLTS TFFLKKMTSH GEEIEDEQIS RIEKGNCKDS QGGMETAICS SPSIVCLTQK LIAEMIGTYF IIFSGCGVVV
101: VNVLYGGTIT FPGICVTWGL IVMVMIYSTG HISGAHFNPA VTVTFAVFRR FPWYQVPLYI GAQLTGSLLA SLTLRLMFNV TPKAFFGTTP TDSSGQALVA
201: EIIISFLLMF VISGVATDSR ATGELAGIAV GMTIILNVFV AGPISGASMN PARSLGPAIV MGRYKGIWVY IVGPFVGIFA GGFVYNFMRF TDKPLRELTK
301: SASFLRSVAQ KDNASKSDG

Arabidopsis Description

NIP4;2NOD26-like intrinsic protein 4;2 [Source:TAIR;Acc:AT5G37820]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.