Factsheet for PGSC0003DMT400084932

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079890.2.1	Tomato	plasma membrane	97.21	98.24
KRH32130	Soybean	plasma membrane	50.52	52.54
VIT_05s0020g02740.t01	Wine grape	plasma membrane	52.96	51.88
KRH71310	Soybean	plasma membrane	51.92	50.34
AT3G06100.1	Thale cress	plasma membrane	47.04	49.09
Bra020777.1-P	Field mustard	plasma membrane	44.25	46.69
CDY27709	Canola	plasma membrane	44.25	46.69
CDY05231	Canola	plasma membrane	43.9	46.32
PGSC0003DMT400078337	Potato	plasma membrane	32.75	34.56
PGSC0003DMT400071510	Potato	plasma membrane	32.75	33.94
PGSC0003DMT400035638	Potato	cytosol, golgi, plasma membrane	15.33	33.33
PGSC0003DMT400073246	Potato	plasma membrane	32.06	31.72
PGSC0003DMT400022061	Potato	peroxisome, plasma membrane, plastid, vacuole	28.22	31.15
PGSC0003DMT400014852	Potato	cytosol, plasma membrane, plastid	32.06	31.08
PGSC0003DMT400078773	Potato	cytoskeleton, cytosol, plasma membrane	28.22	30.34
Os01t0112400-01	Rice	plasma membrane	28.22	28.32
PGSC0003DMT400035640	Potato	endoplasmic reticulum, extracellular	17.07	27.53
PGSC0003DMT400036625	Potato	plasma membrane	29.27	27.45
EES00431	Sorghum	plasma membrane	26.83	26.64
TraesCS3D01G002300.1	Wheat	plasma membrane	26.48	26.39
TraesCSU01G041600.1	Wheat	plasma membrane	26.48	26.39
PGSC0003DMT400015246	Potato	endoplasmic reticulum, peroxisome, plasma membrane	31.36	25.94
Zm00001d040108_P001	Maize	plasma membrane	26.83	25.75
TraesCS3A01G008700.1	Wheat	plasma membrane	25.78	25.69
PGSC0003DMT400073240	Potato	cytosol, plasma membrane, vacuole	16.03	25.41
HORVU3Hr1G001320.1	Barley	plasma membrane, vacuole	18.47	19.13
HORVU3Hr1G001420.2	Barley	nucleus	11.5	15.14

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102587060	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0035445	GO:GO:0046715	GO:GO:0055085	InterPro:IPR023271	UniProt:M1D8E0
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400034503	PGSC:PGSC0003DMG400034503	EnsemblPlants:PGSC0003DMT400084932
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF171	SUPFAM:SSF81338	TMHMM:TMhelix
UniParc:UPI0002959B8F	RefSeq:XP_006349237.1	SEG:seg	:	:	:

Description

Aquaporin, MIP family, NIP subfamily [Source:PGSC_GENE;Acc:PGSC0003DMG400034503]

Coordinates

chr1:+:61927331..61929181

Molecular Weight (calculated)

30700.8 Da

IEP (calculated)

6.498

GRAVY (calculated)

0.642

Length

287 amino acids

Sequence
(BLAST)

001: MIMKLPSYEN GLSVEFQVDA STSEQSTYDQ ETTSSNVEML ERRNVCNSIL GIDPIFLRMV LAEALGTFLL MFCICGMMAS MEIMGVQVGL MEYATTAALT
101: VVVVVFSIGP ISGAHINPAV TLAFAAVGHF PWSKVPLYVV AQVGGSIVAT YTGKMVYGLK AEFVTTKPLH SCTSAFFVEL LATFIVLFLS ASLTNYDPQS
201: TGPLSGFLVG VAIGLAVLIS GPVSGGSMNP ARSLGPAIVA WKFNNLWIYV IAPIIGAVAG VVFYRFLRIQ GWSCKPNSTP TTTHQQI

Best Arabidopsis Sequence Match ( AT3G06100.1 )
(BLAST)

001: MNGEARSRVV DQEAGSTPST LRDEDHPSRQ RLFGCLPYDI DLNPLRIVMA ELVGTFILMF SVCGVISSTQ LSGGHVGLLE YAVTAGLSVV VVVYSIGHIS
101: GAHLNPSITI AFAVFGGFPW SQVPLYITAQ TLGATAATLV GVSVYGVNAD IMATKPALSC VSAFFVELIA TSIVVFLASA LHCGPHQNLG NLTGFVIGTV
201: ISLGVLITGP ISGGSMNPAR SLGPAVVAWD FEDLWIYMTA PVIGAIIGVL TYRSISLKTR PCPSPVSPSV SSLLR

Arabidopsis Description

NIP7-1NLM8 [Source:UniProtKB/TrEMBL;Acc:A0A178V7E3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.