Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- peroxisome 1
- plasma membrane 3
- vacuole 3
- extracellular 1
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g057050.1.1 | Tomato | extracellular, peroxisome, vacuole | 96.15 | 96.15 |
| VIT_11s0078g00490.t01 | Wine grape | extracellular, peroxisome, vacuole | 18.85 | 55.06 |
| VIT_07s0141g00160.t01 | Wine grape | extracellular | 24.23 | 50.81 |
| VIT_07s0141g00080.t01 | Wine grape | extracellular | 24.23 | 50.81 |
| KRH16737 | Soybean | cytosol, peroxisome, vacuole | 51.15 | 49.26 |
| KRH18910 | Soybean | plasma membrane | 41.92 | 43.43 |
| PGSC0003DMT400071510 | Potato | plasma membrane | 45.0 | 42.24 |
| PGSC0003DMT400078337 | Potato | plasma membrane | 42.31 | 40.44 |
| PGSC0003DMT400073246 | Potato | plasma membrane | 43.46 | 38.97 |
| PGSC0003DMT400078773 | Potato | cytoskeleton, cytosol, plasma membrane | 39.62 | 38.58 |
| PGSC0003DMT400015246 | Potato | endoplasmic reticulum, peroxisome, plasma membrane | 45.38 | 34.01 |
| PGSC0003DMT400073240 | Potato | cytosol, plasma membrane, vacuole | 23.08 | 33.15 |
| PGSC0003DMT400035638 | Potato | cytosol, golgi, plasma membrane | 16.54 | 32.58 |
| PGSC0003DMT400014852 | Potato | cytosol, plasma membrane, plastid | 35.77 | 31.42 |
| PGSC0003DMT400036625 | Potato | plasma membrane | 36.15 | 30.72 |
| PGSC0003DMT400084932 | Potato | plasma membrane | 31.15 | 28.22 |
| PGSC0003DMT400035640 | Potato | endoplasmic reticulum, extracellular | 19.23 | 28.09 |
Protein Annotations
| Gene3D:1.20.1080.10 | EntrezGene:102595163 | MapMan:24.3.1.1 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR023271 | UniProt:M1AG37 | InterPro:MIP | InterPro:MIP_CS |
| PFAM:PF00230 | EnsemblPlantsGene:PGSC0003DMG400008556 | PGSC:PGSC0003DMG400008556 | EnsemblPlants:PGSC0003DMT400022061 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF145 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI000296EE22 |
| RefSeq:XP_006360303.1 | SEG:seg | : | : | : | : |
Description
Nodulin-26 [Source:PGSC_GENE;Acc:PGSC0003DMG400008556]
Coordinates
chr12:-:55313516..55315792
Molecular Weight (calculated)
27846.6 Da
IEP (calculated)
8.675
GRAVY (calculated)
0.682
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MASITSIIST TSSKNGIVAD FTSMEEGKHG TVQSPFLSAF QKIIAELVGT YIFIFVGCGS ALVDRERTLT IVGIALAWGL SLMALIYTLG HVSGAHFNPA
101: VTIAFAAARK LPLMQVPIYV LPQFLGSTLA SLTLRVLFNH QGDILPMLTQ YKSPVTDFEA IFWEFLMTLI LMFVICGAAT DDRATKEIAG VAIGVTLVFE
201: VLIAGPITGA SMNPARSLGP AIVSGVYKNQ WVFVIAPILG AMTATGIYSL LRQPKQNTKI
101: VTIAFAAARK LPLMQVPIYV LPQFLGSTLA SLTLRVLFNH QGDILPMLTQ YKSPVTDFEA IFWEFLMTLI LMFVICGAAT DDRATKEIAG VAIGVTLVFE
201: VLIAGPITGA SMNPARSLGP AIVSGVYKNQ WVFVIAPILG AMTATGIYSL LRQPKQNTKI
001: MAEISDITTQ TQTVVLDIEN YQSIDDSRSS DLSAPLVSVS FVQKLIGEFV GTFTMIFAGC SAIVVNETYG KPVTLPGIAL VWGLVVTVMI YSIGHVSGAH
101: FNPAVSIAFA SSKKFPFNQV PGYIAAQLLG STLAAAVLRL VFHLDDDVCS LKGDVYVGTY PSNSNTTSFV MEFIATFNLM FVISAVATDK RATGSFAGIA
201: IGATIVLDIL FSGPISGASM NPARSLGPAL IWGCYKDLWL YIVSPVIGAL SGAWTYGLLR STKKSYSEII RPNCNKVSSR DRQEASQDEI CVLRVVDPAN
301: QNYFICSSPT DINGKCNVTC KLA
101: FNPAVSIAFA SSKKFPFNQV PGYIAAQLLG STLAAAVLRL VFHLDDDVCS LKGDVYVGTY PSNSNTTSFV MEFIATFNLM FVISAVATDK RATGSFAGIA
201: IGATIVLDIL FSGPISGASM NPARSLGPAL IWGCYKDLWL YIVSPVIGAL SGAWTYGLLR STKKSYSEII RPNCNKVSSR DRQEASQDEI CVLRVVDPAN
301: QNYFICSSPT DINGKCNVTC KLA
Arabidopsis Description
NIP3-1Aquaporin NIP3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6T0]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.