Factsheet for Solyc12g057050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, peroxisome, vacuole

Predictor Summary:

plastid 2
peroxisome 1
plasma membrane 2
vacuole 3
extracellular 2
golgi 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, peroxisome, vacuole
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022061	Potato	peroxisome, plasma membrane, plastid, vacuole	96.15	96.15
VIT_11s0078g00490.t01	Wine grape	extracellular, peroxisome, vacuole	18.08	52.81
VIT_07s0141g00160.t01	Wine grape	extracellular	23.46	49.19
VIT_07s0141g00080.t01	Wine grape	extracellular	23.46	49.19
KRH16737	Soybean	cytosol, peroxisome, vacuole	50.77	48.89
KRH18910	Soybean	plasma membrane	41.54	43.03
Solyc03g005980.2.1	Tomato	plasma membrane	43.46	40.79
Solyc05g008080.1.1	Tomato	plasma membrane	42.31	40.44
Solyc02g071920.2.1	Tomato	plasma membrane	42.69	38.28
Solyc02g091420.2.1	Tomato	plasma membrane	38.46	37.45
Solyc06g073590.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	45.38	34.2
Solyc02g063310.2.1	Tomato	cytosol, extracellular, vacuole	17.69	33.58
Solyc02g071910.1.1	Tomato	endoplasmic reticulum, extracellular	27.69	31.17
Solyc08g013730.2.1	Tomato	cytosol, plasma membrane, plastid	35.0	30.85
Solyc03g013340.2.1	Tomato	cytosol	33.46	30.74
Solyc03g117050.2.1	Tomato	plasma membrane	35.0	29.74
Solyc01g079890.2.1	Tomato	plasma membrane	31.15	28.52

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833
GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0055085	InterPro:IPR023271	UniProt:K4DG36	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF145	SUPFAM:SSF81338	EnsemblPlantsGene:Solyc12g057050.1
EnsemblPlants:Solyc12g057050.1.1	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI000276A1EB	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:63111723..63113866

Molecular Weight (calculated)

27821.5 Da

IEP (calculated)

9.073

GRAVY (calculated)

0.677

Length

260 amino acids

Sequence
(BLAST)

001: MASITSIIST NSSKNGIFAD FSSIEEGKHG TIQSPFLSAF QKIIAELVGT YIFIFVGCGS ALVDRERTLT IVGIALAWGL SLMALIYTLS HVSGAHFNPA
101: VTIAFAAARK LPLMQVPMYV LPQFLGSTLA SLTLRVLFNH QGDILPMLTQ YKSPVTDFEA IFWEFLMTLI LMFVICGAAT DDRATKGVAG VAIGVTLVFE
201: VLIAGPITGA SMNPARSLGP AIVSGVYKNQ WVFVIAPILG AMTATGIYGL LRQPKQNTKI

Best Arabidopsis Sequence Match ( AT1G31885.1 )
(BLAST)

001: MAEISDITTQ TQTVVLDIEN YQSIDDSRSS DLSAPLVSVS FVQKLIGEFV GTFTMIFAGC SAIVVNETYG KPVTLPGIAL VWGLVVTVMI YSIGHVSGAH
101: FNPAVSIAFA SSKKFPFNQV PGYIAAQLLG STLAAAVLRL VFHLDDDVCS LKGDVYVGTY PSNSNTTSFV MEFIATFNLM FVISAVATDK RATGSFAGIA
201: IGATIVLDIL FSGPISGASM NPARSLGPAL IWGCYKDLWL YIVSPVIGAL SGAWTYGLLR STKKSYSEII RPNCNKVSSR DRQEASQDEI CVLRVVDPAN
301: QNYFICSSPT DINGKCNVTC KLA

Arabidopsis Description

NIP3-1Aquaporin NIP3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6T0]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.