Factsheet for Solyc03g117050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036625	Potato	plasma membrane	97.06	97.06
AT1G80760.1	Thale cress	golgi, peroxisome, plasma membrane	77.45	77.7
Bra008442.1-P	Field mustard	cytosol, peroxisome, plasma membrane	76.8	77.05
CDY53224	Canola	cytosol, peroxisome, plasma membrane	76.8	77.05
CDX87340	Canola	cytosol, peroxisome, plasma membrane	76.47	76.72
CDY66949	Canola	cytosol, peroxisome, plasma membrane	76.47	76.72
CDY39946	Canola	cytosol, peroxisome, plasma membrane	76.47	76.72
Bra035156.1-P	Field mustard	cytosol, peroxisome, plasma membrane	76.14	76.39
KRH09661	Soybean	plasma membrane, plastid	75.82	76.32
KRH44534	Soybean	plastid	71.57	71.57
KRH15764	Soybean	endoplasmic reticulum, extracellular, plastid, vacuole	24.18	71.15
Solyc08g013730.2.1	Tomato	cytosol, plasma membrane, plastid	62.75	65.08
VIT_09s0070g00080.t01	Wine grape	plastid	74.51	64.41
KRH47366	Soybean	cytosol, plasma membrane, vacuole	42.81	60.37
KRH47369	Soybean	mitochondrion, plastid	35.29	58.7
KRH47396	Soybean	plasma membrane	33.99	56.83
Solyc02g091420.2.1	Tomato	plasma membrane	35.95	41.2
Solyc03g005980.2.1	Tomato	plasma membrane	36.6	40.43
Solyc05g008080.1.1	Tomato	plasma membrane	35.62	40.07
Solyc02g071920.2.1	Tomato	plasma membrane	36.93	38.97
Solyc03g013340.2.1	Tomato	cytosol	35.62	38.52
Solyc02g063310.2.1	Tomato	cytosol, extracellular, vacuole	16.01	35.77
Solyc12g057050.1.1	Tomato	extracellular, peroxisome, vacuole	29.74	35.0
Solyc06g073590.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	35.95	31.88
Solyc01g079890.2.1	Tomato	plasma membrane	27.78	29.93
Solyc02g071910.1.1	Tomato	endoplasmic reticulum, extracellular	22.55	29.87

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833
GO:GO:0007154	GO:GO:0008150	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	GO:GO:0015168
GO:GO:0015204	GO:GO:0015250	GO:GO:0015267	GO:GO:0015793	GO:GO:0016020	GO:GO:0016021
GO:GO:0034220	GO:GO:0035445	GO:GO:0046713	GO:GO:0046715	GO:GO:0055085	GO:GO:0071918
GO:GO:0080029	InterPro:IPR023271	UniProt:K4BLK7	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF263	SUPFAM:SSF81338	EnsemblPlantsGene:Solyc03g117050.2
EnsemblPlants:Solyc03g117050.2.1	TMHMM:TMhelix	UniParc:UPI00027674D4	SEG:seg	:	:

Description

Aquaporin NIP6-1 [Source:Projected from Arabidopsis thaliana (AT1G80760) UniProtKB/Swiss-Prot;Acc:Q9SAI4]

Coordinates

chr3:+:66316148..66319287

Molecular Weight (calculated)

31659.8 Da

IEP (calculated)

8.339

GRAVY (calculated)

0.461

Length

306 amino acids

Sequence
(BLAST)

001: MDPEEGVSAP STPATPGTPG APLFGGLIKH ERRNGGNGKK SLLKSCKCFG VEPWASEEGT LPAVTCMLPP PPISLARKVG AEFIGTLILI FAGTATAIVN
101: QKTQGSETLI GLAASTGLAV MIVILSTGHI SGAHLNPAVT IGFAALNHFP WKHVPVYIGA QIIASFCAAF TLKVVLHPIM GGGVTVPSGS YVQAFALEFI
201: ISFNLMFVVT AVATDTRAVG ELAGIAVGAT VMLNILIAGE TTGASMNPVR TLGPAVAVGN YKAIWIYLTA PILGALIGAG VYSAVKLPDE DRDNHPKPSL
301: EHSFRR

Best Arabidopsis Sequence Match ( AT1G80760.1 )
(BLAST)

001: MDHEEIPSTP STPATTPGTP GAPLFGGFEG KRNGHNGRYT PKSLLKSCKC FSVDNEWALE DGRLPPVTCS LPPPNVSLYR KLGAEFVGTL ILIFAGTATA
101: IVNQKTDGAE TLIGCAASAG LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER
301: RSFRR

Arabidopsis Description

NIP6-1Aquaporin NIP6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI4]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.