Factsheet for PGSC0003DMT400036625

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117050.2.1	Tomato	plasma membrane	97.06	97.06
Bra008442.1-P	Field mustard	cytosol, peroxisome, plasma membrane	76.8	77.05
CDY53224	Canola	cytosol, peroxisome, plasma membrane	76.8	77.05
AT1G80760.1	Thale cress	golgi, peroxisome, plasma membrane	76.8	77.05
CDX87340	Canola	cytosol, peroxisome, plasma membrane	76.47	76.72
CDY39946	Canola	cytosol, peroxisome, plasma membrane	76.47	76.72
Bra035156.1-P	Field mustard	cytosol, peroxisome, plasma membrane	76.14	76.39
KRH09661	Soybean	plasma membrane, plastid	75.82	76.32
CDY66949	Canola	cytosol, peroxisome, plasma membrane	75.82	76.07
KRH44534	Soybean	plastid	71.57	71.57
KRH15764	Soybean	endoplasmic reticulum, extracellular, plastid, vacuole	24.18	71.15
VIT_09s0070g00080.t01	Wine grape	plastid	75.49	65.25
PGSC0003DMT400014852	Potato	cytosol, plasma membrane, plastid	62.09	64.19
KRH47366	Soybean	cytosol, plasma membrane, vacuole	42.81	60.37
KRH47369	Soybean	mitochondrion, plastid	35.29	58.7
KRH47396	Soybean	plasma membrane	33.99	56.83
PGSC0003DMT400035640	Potato	endoplasmic reticulum, extracellular	24.84	42.7
PGSC0003DMT400078773	Potato	cytoskeleton, cytosol, plasma membrane	36.6	41.95
PGSC0003DMT400078337	Potato	plasma membrane	36.6	41.18
PGSC0003DMT400071510	Potato	plasma membrane	37.25	41.16
PGSC0003DMT400073246	Potato	plasma membrane	36.93	38.97
PGSC0003DMT400022061	Potato	peroxisome, plasma membrane, plastid, vacuole	30.72	36.15
PGSC0003DMT400073240	Potato	cytosol, plasma membrane, vacuole	21.24	35.91
PGSC0003DMT400015246	Potato	endoplasmic reticulum, peroxisome, plasma membrane	36.6	32.28
PGSC0003DMT400035638	Potato	cytosol, golgi, plasma membrane	13.07	30.3
PGSC0003DMT400084932	Potato	plasma membrane	27.45	29.27

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102599870	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0007154
GO:GO:0008150	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	GO:GO:0015168	GO:GO:0015204
GO:GO:0015267	GO:GO:0015793	GO:GO:0016020	GO:GO:0016021	GO:GO:0035445	GO:GO:0046713
GO:GO:0046715	GO:GO:0055085	GO:GO:0071918	GO:GO:0080029	InterPro:IPR023271	UniProt:M1B3X8
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400014123	PGSC:PGSC0003DMG400014123	EnsemblPlants:PGSC0003DMT400036625
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF263	SUPFAM:SSF81338	TMHMM:TMhelix
UniParc:UPI00029578FF	RefSeq:XP_006341363.1	SEG:seg	:	:	:

Description

Aquaporin, MIP family, NIP subfamily [Source:PGSC_GENE;Acc:PGSC0003DMG400014123]

Coordinates

chr3:+:56859060..56862258

Molecular Weight (calculated)

31686.8 Da

IEP (calculated)

8.338

GRAVY (calculated)

0.471

Length

306 amino acids

Sequence
(BLAST)

001: MDPEEGVSAP STPATPGTPG VPLFGGLIKH ERRNGGNGKK SFLKSCKCFS VEPWASEEGT LPAVSCMLPP PPVSLARKVG AEFIGTLILI FAGTATAIVN
101: QKTQGSETLF GLAASTGLAV MIVILSTGHI SGAHLNPAVT IGFAALKHFP WKHVPVYIGA QIIASFCAAF TLKVVLHPIM GGGVTIPSGS YVQAFALEFI
201: ISFNLMFVVT AVATDTRAVG ELAGIAVGAT VMLNILIAGE TTGASMNPVR TLGPAVAVGN YKAIWIYLTA PILGALIGAG VYSAVKLPDE DGDNHPKPSL
301: EHSFRR

Best Arabidopsis Sequence Match ( AT1G80760.1 )
(BLAST)

001: MDHEEIPSTP STPATTPGTP GAPLFGGFEG KRNGHNGRYT PKSLLKSCKC FSVDNEWALE DGRLPPVTCS LPPPNVSLYR KLGAEFVGTL ILIFAGTATA
101: IVNQKTDGAE TLIGCAASAG LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER
301: RSFRR

Arabidopsis Description

NIP6-1Aquaporin NIP6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI4]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.