Factsheet for PGSC0003DMT400078337

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008080.1.1	Tomato	plasma membrane	95.96	95.96
GSMUA_Achr9P00710_001	Banana	endoplasmic reticulum, extracellular, vacuole	49.63	71.81
PGSC0003DMT400078773	Potato	cytoskeleton, cytosol, plasma membrane	64.34	65.54
PGSC0003DMT400071510	Potato	plasma membrane	57.35	56.32
KRH50367	Soybean	plasma membrane	53.68	55.73
PGSC0003DMT400073246	Potato	plasma membrane	58.82	55.17
PGSC0003DMT400022061	Potato	peroxisome, plasma membrane, plastid, vacuole	40.44	42.31
PGSC0003DMT400035638	Potato	cytosol, golgi, plasma membrane	20.22	41.67
PGSC0003DMT400035640	Potato	endoplasmic reticulum, extracellular	26.84	41.01
PGSC0003DMT400015246	Potato	endoplasmic reticulum, peroxisome, plasma membrane	51.84	40.63
PGSC0003DMT400073240	Potato	cytosol, plasma membrane, vacuole	25.0	37.57
PGSC0003DMT400036625	Potato	plasma membrane	41.18	36.6
PGSC0003DMT400014852	Potato	cytosol, plasma membrane, plastid	38.6	35.47
PGSC0003DMT400084932	Potato	plasma membrane	34.56	32.75

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102585910	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M1CZX0	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG401030499	PGSC:PGSC0003DMG401030499	EnsemblPlants:PGSC0003DMT400078337	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF181	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0002962084
RefSeq:XP_006344325.1	SEG:seg	:	:	:	:

Description

Aquaporin, MIP family, NIP subfamily [Source:PGSC_GENE;Acc:PGSC0003DMG401030499]

Coordinates

chr5:-:4214921..4217715

Molecular Weight (calculated)

29262.3 Da

IEP (calculated)

8.198

GRAVY (calculated)

0.669

Length

272 amino acids

Sequence
(BLAST)

001: MSTKDIREIE EGNCSNYTNN ASGEDSSLCT SPEVVIVIQK VIAEVIGTYF LIFVGCGAVA VDKTYGSVTF PGICVAWGLI VMVMVYSVGH ISGAHFNPAV
101: TIAFAIFRHF PFKQVPLYIM AQLVGAILGS GTLYLLLDLK TQAFFGTTPV GSNVQSLILE FIISYLLMFV ISGVATDNRS IGELAGIAIG MTILLNVLIA
201: GPVSGASMNP ARSIGPAIVM HHYKGLWVYI IGPILGTICG AFTYNLIRFT EKPLKELTLT KTTTFLKSMS RK

Best Arabidopsis Sequence Match ( AT5G37820.2 )
(BLAST)

001: MYKSSSTSKF STHQKFQFLF YFSPNKKLTS TFFLKKMTSH GEEIEDEQIS RIEKGNCKDS QGGMETAICS SPSIVCLTQK LIAEMIGTYF IIFSGCGVVV
101: VNVLYGGTIT FPGICVTWGL IVMVMIYSTG HISGAHFNPA VTVTFAVFRR FPWYQVPLYI GAQLTGSLLA SLTLRLMFNV TPKAFFGTTP TDSSGQALVA
201: EIIISFLLMF VISGVATDSR ATGELAGIAV GMTIILNVFV AGPISGASMN PARSLGPAIV MGRYKGIWVY IVGPFVGIFA GGFVYNFMRF TDKPLRELTK
301: SASFLRSVAQ KDNASKSDG

Arabidopsis Description

NIP4;2NOD26-like intrinsic protein 4;2 [Source:TAIR;Acc:AT5G37820]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.