Factsheet for PGSC0003DMT400014852

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g013730.2.1	Tomato	cytosol, plasma membrane, plastid	98.65	98.98
GSMUA_AchrUn_...	Banana	extracellular	66.55	88.34
VIT_02s0025g03260.t01	Wine grape	plastid	87.5	86.91
CDY72002	Canola	plastid	23.65	82.35
Bra033181.1-P	Field mustard	plasma membrane	81.42	80.07
CDY25253	Canola	plasma membrane	81.42	80.07
CDX94261	Canola	plasma membrane	80.74	79.4
CDY51581	Canola	plastid	19.26	79.17
AT4G10380.1	Thale cress	cytosol	81.08	78.95
Bra000710.1-P	Field mustard	plasma membrane	79.73	78.41
CDX90757	Canola	plasma membrane	79.73	78.41
CDY05100	Canola	plasma membrane	79.73	78.41
CDY16269	Canola	plastid	18.92	77.78
CDX67591	Canola	plasma membrane	78.04	76.74
EER91378	Sorghum	plastid	78.04	76.74
Zm00001d032461_P001	Maize	plastid	77.03	75.5
KRH35064	Soybean	plastid	75.68	74.92
TraesCS1A01G177500.1	Wheat	plastid	75.68	74.67
TraesCS1D01G176000.1	Wheat	plastid	75.34	74.58
TraesCS1B01G202700.1	Wheat	plastid	74.66	74.16
KRG91709	Soybean	plastid	63.85	74.12
Os10t0513200-01	Rice	plasma membrane	77.03	73.31
HORVU3Hr1G014440.3	Barley	golgi, mitochondrion, plasma membrane	57.43	65.89
GSMUA_Achr1P04130_001	Banana	plasma membrane	79.39	65.46
PGSC0003DMT400036625	Potato	plasma membrane	64.19	62.09
HORVU1Hr1G047100.3	Barley	plastid	65.2	52.59
PGSC0003DMT400071510	Potato	plasma membrane	40.88	43.68
PGSC0003DMT400078773	Potato	cytoskeleton, cytosol, plasma membrane	36.15	40.07
PGSC0003DMT400073246	Potato	plasma membrane	39.19	40.0
PGSC0003DMT400078337	Potato	plasma membrane	35.47	38.6
PGSC0003DMT400035640	Potato	endoplasmic reticulum, extracellular	22.64	37.64
PGSC0003DMT400022061	Potato	peroxisome, plasma membrane, plastid, vacuole	31.42	35.77
PGSC0003DMT400015246	Potato	endoplasmic reticulum, peroxisome, plasma membrane	39.86	34.01
PGSC0003DMT400073240	Potato	cytosol, plasma membrane, vacuole	20.61	33.7
PGSC0003DMT400084932	Potato	plasma membrane	31.08	32.06
PGSC0003DMT400035638	Potato	cytosol, golgi, plasma membrane	13.18	29.55

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	ProteinID:AFD96389	ProteinID:AFD96389.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810
GO:GO:0006833	GO:GO:0007154	GO:GO:0008150	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991
GO:GO:0010036	GO:GO:0015105	GO:GO:0015250	GO:GO:0015267	GO:GO:0015700	GO:GO:0016020
GO:GO:0016021	GO:GO:0016328	GO:GO:0035445	GO:GO:0046685	GO:GO:0046713	GO:GO:0046715
GO:GO:0055085	GO:GO:0080029	InterPro:IPR023271	EMBL:JQ088285	UniProt:M1A502	InterPro:MIP
InterPro:MIP_CS	PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400005803	PGSC:PGSC0003DMG400005803	EnsemblPlants:PGSC0003DMT400014852	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF102	SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI000296EDF0
SEG:seg	:	:	:	:	:

Description

Nodulin-26 [Source:PGSC_GENE;Acc:PGSC0003DMG400005803]

Coordinates

chr8:+:5436433..5440098

Molecular Weight (calculated)

30653.3 Da

IEP (calculated)

8.481

GRAVY (calculated)

0.514

Length

296 amino acids

Sequence
(BLAST)

001: MAELENGISA PATPGTPTPL FPSLRVDSMG SYDRKSMPRC KCLPLDAATW GAPHTCLADF PAPDVSLTRK LGAEFVGTFI LIFAATAGPI VNQKYNGAES
101: LIGNAACSGL AVMIVILSTG HISGAHLNPS LTIAFAALRH FPWVQVPAYV AAQVSASICA SFALKGVFHP FMSGGVTVPS VNTGQAFALE FLITFNLLFV
201: VTAVATDTRA VGELAGIAVG ATVMLNILVA GPSSGASMNP VRTLGPAVAA GNYKSLWIYL VAPTLGAIAG AAVYTLVKLR GDDTTETPSQ VRSFRR

Best Arabidopsis Sequence Match ( AT4G10380.1 )
(BLAST)

001: MAPPEAEVGA VMVMAPPTPG TPGTPGGPLI TGMRVDSMSF DHRKPTPRCK CLPVMGSTWG QHDTCFTDFP SPDVSLTRKL GAEFVGTFIL IFTATAGPIV
101: NQKYDGAETL IGNAACAGLA VMIIILSTGH ISGAHLNPSL TIAFAALRHF PWAHVPAYIA AQVSASICAS FALKGVFHPF MSGGVTIPSV SLGQAFALEF
201: IITFILLFVV TAVATDTRAV GELAGIAVGA TVMLNILVAG PSTGGSMNPV RTLGPAVASG NYRSLWVYLV APTLGAISGA AVYTGVKLND SVTDPPRPVR
301: SFRR

Arabidopsis Description

NIP5-1At4g10380 [Source:UniProtKB/TrEMBL;Acc:A3KPG0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.