Factsheet for VIT_09s0070g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 5
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036625	Potato	plasma membrane	65.25	75.49
Solyc03g117050.2.1	Tomato	plasma membrane	64.41	74.51
AT1G80760.1	Thale cress	golgi, peroxisome, plasma membrane	62.15	72.13
Bra008442.1-P	Field mustard	cytosol, peroxisome, plasma membrane	61.86	71.8
CDX87340	Canola	cytosol, peroxisome, plasma membrane	61.86	71.8
CDY53224	Canola	cytosol, peroxisome, plasma membrane	61.86	71.8
Bra035156.1-P	Field mustard	cytosol, peroxisome, plasma membrane	61.58	71.48
KRH15764	Soybean	endoplasmic reticulum, extracellular, plastid, vacuole	20.9	71.15
CDY39946	Canola	cytosol, peroxisome, plasma membrane	61.3	71.15
CDY66949	Canola	cytosol, peroxisome, plasma membrane	60.73	70.49
KRH09661	Soybean	plasma membrane, plastid	59.89	69.74
KRH44534	Soybean	plastid	58.47	67.65
VIT_02s0025g03260.t01	Wine grape	plastid	50.56	60.07
KRH47366	Soybean	cytosol, plasma membrane, vacuole	36.44	59.45
KRH47369	Soybean	mitochondrion, plastid	30.23	58.15
KRH47396	Soybean	plasma membrane	29.66	57.38
VIT_11s0078g00490.t01	Wine grape	extracellular, peroxisome, vacuole	11.3	44.94
VIT_07s0141g00080.t01	Wine grape	extracellular	14.69	41.94
VIT_07s0141g00160.t01	Wine grape	extracellular	14.69	41.94
VIT_14s0006g01540.t01	Wine grape	plasma membrane	32.2	40.57
VIT_10s0003g01830.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	31.64	39.72
VIT_14s0108g00700.t01	Wine grape	peroxisome	31.92	38.44
VIT_14s0006g01560.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	11.58	35.04
VIT_05s0020g02740.t01	Wine grape	plasma membrane	27.12	32.76

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:100258460	wikigene:100258460	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
ProteinID:CBI38932	ProteinID:CBI38932.3	UniProt:D7U868	EMBL:FN596740	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833
GO:GO:0007154	GO:GO:0008150	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	GO:GO:0015168
GO:GO:0015204	GO:GO:0015250	GO:GO:0015267	GO:GO:0015793	GO:GO:0016020	GO:GO:0016021
GO:GO:0034220	GO:GO:0035445	GO:GO:0046713	GO:GO:0046715	GO:GO:0055085	GO:GO:0071918
GO:GO:0080029	InterPro:IPR023271	EntrezGene:LOC100258460	wikigene:LOC100258460	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF263	SUPFAM:SSF81338
TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI00015CB967	ArrayExpress:VIT_09s0070g00080	EnsemblPlantsGene:VIT_09s0070g00080	EnsemblPlants:VIT_09s0070g00080.t01
RefSeq:XP_002272988	RefSeq:XP_002272988.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:13012090..13014358

Molecular Weight (calculated)

37331.1 Da

IEP (calculated)

8.241

GRAVY (calculated)

0.225

Length

354 amino acids

Sequence
(BLAST)

001: MDTDHDVPSA PSTPVTPSTP GAPLFHGFKA HGTSSGNGRR SFLRSCKCFS VEQWAMEEGS LPTLSCSWPT PPLPVSLARK MGAEFIGTFM LIFGGAATGI
101: VNQKTQGSET LLGLAASTGL AVMVIILSTG HISGAHLNPA VTIAFAALRH FPWKHVPVYI GSQLMGSLCA AFALKGIFNP VMDGGVTVPS HSGAYGQAFA
201: LEFIISFFLM FVVTAVATDT RAVGSLAGIA VGGTVMLNIL IAGETTGASM NPVRTLGPAI AVNNFKAIWV YLTAPILGAL CGAGVYTAVK LPEEDGNTHS
301: LNKSMTVQSE GDQSMSSVGL QHKFRNFTRK VRQFFEEIRN NSPMDRDPAS TYNT

Best Arabidopsis Sequence Match ( AT1G80760.1 )
(BLAST)

001: MDHEEIPSTP STPATTPGTP GAPLFGGFEG KRNGHNGRYT PKSLLKSCKC FSVDNEWALE DGRLPPVTCS LPPPNVSLYR KLGAEFVGTL ILIFAGTATA
101: IVNQKTDGAE TLIGCAASAG LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER
301: RSFRR

Arabidopsis Description

NIP6-1Aquaporin NIP6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI4]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.