Factsheet for VIT_14s0006g01540.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73019	Soybean	cytosol, peroxisome, plasma membrane	64.41	69.35
KRH15118	Soybean	plasma membrane	64.06	68.97
PGSC0003DMT400078773	Potato	cytoskeleton, cytosol, plasma membrane	65.12	68.54
Solyc02g091420.2.1	Tomato	plasma membrane	63.7	67.04
VIT_11s0078g00490.t01	Wine grape	extracellular, peroxisome, vacuole	16.73	52.81
VIT_10s0003g01830.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	51.6	51.42
VIT_07s0141g00080.t01	Wine grape	extracellular	19.93	45.16
VIT_07s0141g00160.t01	Wine grape	extracellular	19.93	45.16
Solyc02g063310.2.1	Tomato	cytosol, extracellular, vacuole	21.35	43.8
VIT_14s0006g01560.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	17.44	41.88
VIT_14s0108g00700.t01	Wine grape	peroxisome	41.64	39.8
VIT_02s0025g03260.t01	Wine grape	plastid	40.21	37.92
VIT_09s0070g00080.t01	Wine grape	plastid	40.57	32.2
VIT_05s0020g02740.t01	Wine grape	plasma membrane	33.45	32.08

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:100256997	wikigene:100256997	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
ProteinID:CCB57652	ProteinID:CCB57652.1	UniProt:F6HSL2	EMBL:FN596245	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833
GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0055085	InterPro:IPR023271	EntrezGene:LOC100256997	wikigene:LOC100256997	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF181	SUPFAM:SSF81338
TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0002108054	ArrayExpress:VIT_14s0006g01540	EnsemblPlantsGene:VIT_14s0006g01540	EnsemblPlants:VIT_14s0006g01540.t01
RefSeq:XP_003633704	RefSeq:XP_003633704.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:+:17711147..17713378

Molecular Weight (calculated)

29851.8 Da

IEP (calculated)

8.606

GRAVY (calculated)

0.624

Length

281 amino acids

Sequence
(BLAST)

001: MSRKPDEMTE EISKVEEGLG NAYKPKAIDE VYLCTSPAVV TITQKVIAEV IGTYFVVFAG CGSVAVNGIY GSVTFPGVAA TWGLIVLVMI YALGHISGAH
101: FNPAVTITFA ILRRFPYWQV PLYIIGQLMG SILASGTLSF MFNIDREAYF GTVPAGSHGQ SLVLEIIITF LLMFVISGVA TDSRATGELA GIAVGMTIML
201: NVFVAGPVSG ASMNPARSIG PALVKHVYKG LWVYVIGPII GAIAGGLTYN LIRFTEKPLS ELTKTSSLLR TISKSVPSTS T

Best Arabidopsis Sequence Match ( AT5G37810.1 )
(BLAST)

001: MSSHSDEIEE EQISRIEKGK GKDCQGGIET VICTSPSIVC LTQKLIAEMI GTYFIVFSGC GVVVVNVLYG GTITFPGICV TWGLIVMVMI YSTGHISGAH
101: FNPAVTVTFA IFRRFPWHQV PLYIGAQFAG SLLASLTLRL MFKVTPEAFF GTTPADSPAR ALVAEIIISF LLMFVISGVA TDNRAVGELA GIAVGMTIMV
201: NVFVAGPISG ASMNPARSLG PALVMGVYKH IWVYIVGPVL GVISGGFVYN LIRFTDKPLR ELTKSASFLR AVSPSHKGSS SKT

Arabidopsis Description

NIP4-1Putative aquaporin NIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIZ9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.