CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87340	Canola	cytosol, peroxisome, plasma membrane	99.34	99.34
AT1G80760.1	Thale cress	golgi, peroxisome, plasma membrane	96.07	96.07
CDY53224	Canola	cytosol, peroxisome, plasma membrane	95.41	95.41
CDY66949	Canola	cytosol, peroxisome, plasma membrane	94.43	94.43
Solyc03g117050.2.1	Tomato	plasma membrane	76.72	76.47
PGSC0003DMT400036625	Potato	plasma membrane	76.72	76.47
KRH09661	Soybean	plasma membrane, plastid	75.74	75.99
KRH15764	Soybean	endoplasmic reticulum, extracellular, plastid, vacuole	25.57	75.0
KRH44534	Soybean	plastid	72.46	72.22
CDY72002	Canola	plastid	19.67	70.59
CDY05100	Canola	plasma membrane	65.57	66.45
CDX90757	Canola	plasma membrane	65.57	66.45
CDX94261	Canola	plasma membrane	64.59	65.45
CDY25253	Canola	plasma membrane	64.59	65.45
CDX67591	Canola	plasma membrane	62.95	63.79
CDY51581	Canola	plastid	14.75	62.5
KRH47366	Soybean	cytosol, plasma membrane, vacuole	43.93	61.75
VIT_09s0070g00080.t01	Wine grape	plastid	71.15	61.3
CDY16269	Canola	plastid	14.43	61.11
KRH47369	Soybean	mitochondrion, plastid	36.72	60.87
KRH47396	Soybean	plasma membrane	35.74	59.56
CDY71538	Canola	extracellular, plasma membrane, vacuole	34.43	46.05
CDX99689	Canola	extracellular	24.59	44.38
CDX74558	Canola	plasma membrane	40.0	43.11
CDY01700	Canola	plasma membrane	39.67	42.76
CDX99688	Canola	plasma membrane	38.36	41.34
CDY65403	Canola	plasma membrane	38.03	40.99
CDX98596	Canola	cytosol, peroxisome, plasma membrane	39.67	40.6
CDY01565	Canola	cytosol, peroxisome, plasma membrane	39.67	40.6
CDX78905	Canola	cytosol, peroxisome, plasma membrane	38.69	39.73
CDX99411	Canola	cytosol, peroxisome, plasma membrane	38.36	39.39
CDY41749	Canola	plasma membrane	37.7	38.85
CDX84320	Canola	extracellular, plasma membrane, plastid, vacuole	36.07	38.46
CDY17243	Canola	extracellular, plasma membrane, plastid, vacuole	36.07	38.46
CDY17241	Canola	cytosol, plasma membrane, plastid, vacuole	35.41	37.76
CDY35532	Canola	endoplasmic reticulum, extracellular, vacuole	34.75	37.72
CDX84321	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	35.08	37.41
CDX84114	Canola	plasma membrane	39.34	35.93
CDY27709	Canola	plasma membrane	31.48	35.29
CDY05231	Canola	plasma membrane	31.48	35.29
CDY35531	Canola	vacuole	33.11	32.27
CDY29922	Canola	peroxisome, plasma membrane, vacuole	34.43	32.01
CDY29921	Canola	vacuole	32.79	31.75
CDY69767	Canola	plasma membrane	24.92	28.46
CDY35528	Canola	cytosol	12.13	27.41

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	GO:A0A078HQN3	UniProt:A0A078HQN3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
EnsemblPlants:CDY39946	ProteinID:CDY39946	ProteinID:CDY39946.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00068824001	InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF170	SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI0004EEA5C8
SEG:seg	:	:	:	:	:

Description

BnaC06g40240DBnaC06g40240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQN3]

Coordinates

chrLK032461:+:37654..39311

Molecular Weight (calculated)

31836.0 Da

IEP (calculated)

8.476

GRAVY (calculated)

0.427

Length

305 amino acids

Sequence
(BLAST)

001: MDHEEIPSMP STPATTPGTP GAPLFGGFEG KRNGHNGKYT PKSILKSCKC FNVDNEWALE DGRLTPVSCA LPPPNVSLYR KLGAEFVGTL ILIFAGTATA
101: IVNQKTDGAV TLIGCAASAG LAVMIVILST GHISGAHLNP AITIAFAALK HFPWKHVPVY IGAQVMASLC AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKEK
301: RSFRR

Best Arabidopsis Sequence Match ( AT1G80760.1 )
(BLAST)

001: MDHEEIPSTP STPATTPGTP GAPLFGGFEG KRNGHNGRYT PKSLLKSCKC FSVDNEWALE DGRLPPVTCS LPPPNVSLYR KLGAEFVGTL ILIFAGTATA
101: IVNQKTDGAE TLIGCAASAG LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER
301: RSFRR

Arabidopsis Description

NIP6-1Aquaporin NIP6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI4]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.