CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular, vacuole

Predictor Summary:

plastid 2
mitochondrion 1
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17243	Canola	extracellular, plasma membrane, plastid, vacuole	98.25	98.25
CDX84321	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	96.15	96.15
CDY17241	Canola	cytosol, plasma membrane, plastid, vacuole	95.8	95.8
AT2G34390.1	Thale cress	plasma membrane	87.06	86.46
AT2G29870.1	Thale cress	plastid	39.86	82.01
CDX98596	Canola	cytosol, peroxisome, plasma membrane	54.2	52.01
CDY01565	Canola	cytosol, peroxisome, plasma membrane	54.2	52.01
CDX78905	Canola	cytosol, peroxisome, plasma membrane	53.85	51.85
CDX99411	Canola	cytosol, peroxisome, plasma membrane	52.45	50.51
CDY72002	Canola	plastid	13.29	44.71
CDY51581	Canola	plastid	11.19	44.44
CDY71538	Canola	extracellular, plasma membrane, vacuole	35.31	44.3
CDY35532	Canola	endoplasmic reticulum, extracellular, vacuole	43.36	44.13
CDY41749	Canola	plasma membrane	45.1	43.58
PGSC0003DMT400073240	Potato	cytosol, plasma membrane, vacuole	27.27	43.09
CDY16269	Canola	plastid	10.84	43.06
Solyc06g073590.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	51.05	42.32
PGSC0003DMT400015246	Potato	endoplasmic reticulum, peroxisome, plasma membrane	50.35	41.5
CDX99688	Canola	plasma membrane	40.91	41.34
CDY01700	Canola	plasma membrane	40.56	40.99
CDY65403	Canola	plasma membrane	40.56	40.99
TraesCS7A01G355000.1	Wheat	peroxisome	39.86	40.86
TraesCS7B01G272700.1	Wheat	plasma membrane	39.86	40.86
TraesCS7D01G367800.1	Wheat	golgi, peroxisome, plasma membrane	39.86	40.86
CDX84114	Canola	plasma membrane	47.55	40.72
CDX74558	Canola	plasma membrane	40.21	40.64
CDY29921	Canola	vacuole	42.66	38.73
CDY35531	Canola	vacuole	42.31	38.66
CDX99689	Canola	extracellular	22.73	38.46
Os06t0552700-01	Rice	cytosol, peroxisome, plastid	36.71	38.46
CDY29922	Canola	peroxisome, plasma membrane, vacuole	44.06	38.41
Solyc02g071910.1.1	Tomato	endoplasmic reticulum, extracellular	30.07	37.23
KXG20157	Sorghum	golgi, nucleus, plasma membrane	37.41	36.77
CDY39946	Canola	cytosol, peroxisome, plasma membrane	38.46	36.07
CDX87340	Canola	cytosol, peroxisome, plasma membrane	38.46	36.07
CDY66949	Canola	cytosol, peroxisome, plasma membrane	38.46	36.07
CDY53224	Canola	cytosol, peroxisome, plasma membrane	38.46	36.07
CDY25253	Canola	plasma membrane	37.41	35.55
CDX94261	Canola	plasma membrane	37.41	35.55
CDX90757	Canola	plasma membrane	37.06	35.22
CDX67591	Canola	plasma membrane	37.06	35.22
CDY05100	Canola	plasma membrane	36.71	34.88
Zm00001d046303_P001	Maize	golgi, peroxisome, plasma membrane	37.06	33.44
CDY27709	Canola	plasma membrane	30.07	31.62
CDY05231	Canola	plasma membrane	29.72	31.25
CDY35528	Canola	cytosol	14.34	30.37
CDY69767	Canola	plasma membrane	28.32	30.34

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	GO:A0A078D5B0	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	EnsemblPlants:CDX84320
ProteinID:CDX84320	ProteinID:CDX84320.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00141429001	InterPro:IPR023271
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF155	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0004EE0A9F	SEG:seg

Description

BnaC04g10820D

Coordinates

chrLK031836:+:1782743..1784072

Molecular Weight (calculated)

30282.1 Da

IEP (calculated)

8.477

GRAVY (calculated)

0.571

Length

286 amino acids

Sequence
(BLAST)

001: MDDISVSKSN HGNVVVLNIQ APPVSKTSFP SSPSTSPPLL SVHFLQKLIA ELVGTYYLIF AGCAAIAVNA QHNNVVTLVG IAVVWGLVVM VLVYSLGHIS
101: AHFNPAVTIA LASCKRFPLY QLPAYLTVQV IGSTLASATL RLLFDLNNDV CSKKHDVFLG STPSGTDLQA FGMEFIITGF LMIVVCAVTT SKRTSEELEG
201: LIIGATVTLN VIFAGEVSGA SMNPARSLGP ALVWGCYKGI WIYLLAPTLG AVSAALIHKL LPATQKANSE FSKTGSSHKR VTDLPL

Best Arabidopsis Sequence Match ( AT2G34390.1 )
(BLAST)

001: MDDISVSKSN HGNVVVLNIK ASSLADTSLP SNKHESSSPP LLSVHFLQKL LAELVGTYYL IFAGCAAIAV NAQHNHVVTL VGIAVVWGIV IMVLVYCLGH
101: LSAHFNPAVT LALASSQRFP LNQVPAYITV QVIGSTLASA TLRLLFDLNN DVCSKKHDVF LGSSPSGSDL QAFVMEFIIT GFLMLVVCAV TTTKRTTEEL
201: EGLIIGATVT LNVIFAGEVS GASMNPARSI GPALVWGCYK GIWIYLLAPT LGAVSGALIH KMLPSIQNAE PEFSKTGSSH KRVTDLPL

Arabidopsis Description

NIP2-1Aquaporin NIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W037]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.