CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99688	Canola	plasma membrane	90.11	90.11
CDY71538	Canola	extracellular, plasma membrane, vacuole	72.44	89.91
CDX99689	Canola	extracellular	51.24	85.8
CDY01700	Canola	plasma membrane	83.04	83.04
CDX74558	Canola	plasma membrane	82.33	82.33
AT5G37820.2	Thale cress	plastid	86.22	76.49
PGSC0003DMT400078773	Potato	cytoskeleton, cytosol, plasma membrane	67.14	71.16
Solyc02g091420.2.1	Tomato	plasma membrane	65.72	69.66
CDY69767	Canola	plasma membrane	63.96	67.79
KRH15118	Soybean	plasma membrane	56.89	61.69
KRH73019	Soybean	cytosol, peroxisome, plasma membrane	56.89	61.69
CDX78905	Canola	cytosol, peroxisome, plasma membrane	53.36	50.84
CDY01565	Canola	cytosol, peroxisome, plasma membrane	53.36	50.67
CDY72002	Canola	plastid	15.19	50.59
CDX98596	Canola	cytosol, peroxisome, plasma membrane	53.0	50.34
CDX99411	Canola	cytosol, peroxisome, plasma membrane	52.3	49.83
Solyc02g063310.2.1	Tomato	cytosol, extracellular, vacuole	22.61	46.72
CDY16269	Canola	plastid	11.66	45.83
CDY51581	Canola	plastid	11.66	45.83
CDY41749	Canola	plasma membrane	46.29	44.26
CDY35532	Canola	endoplasmic reticulum, extracellular, vacuole	43.82	44.13
CDY17241	Canola	cytosol, plasma membrane, plastid, vacuole	40.99	40.56
CDX84320	Canola	extracellular, plasma membrane, plastid, vacuole	40.99	40.56
CDX84321	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	40.64	40.21
CDX67591	Canola	plasma membrane	42.76	40.2
VIT_14s0006g01560.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	16.61	40.17
CDY17243	Canola	extracellular, plasma membrane, plastid, vacuole	40.28	39.86
CDX84114	Canola	plasma membrane	47.0	39.82
CDY05100	Canola	plasma membrane	42.05	39.53
CDX90757	Canola	plasma membrane	42.05	39.53
CDY25253	Canola	plasma membrane	41.7	39.2
CDX94261	Canola	plasma membrane	41.7	39.2
CDY39946	Canola	cytosol, peroxisome, plasma membrane	40.99	38.03
CDX87340	Canola	cytosol, peroxisome, plasma membrane	40.99	38.03
CDY35531	Canola	vacuole	42.05	38.02
CDY29921	Canola	vacuole	42.05	37.78
CDY53224	Canola	cytosol, peroxisome, plasma membrane	40.64	37.7
CDY66949	Canola	cytosol, peroxisome, plasma membrane	39.93	37.05
CDY29922	Canola	peroxisome, plasma membrane, vacuole	42.4	36.59
CDY27709	Canola	plasma membrane	34.63	36.03
CDY05231	Canola	plasma membrane	34.63	36.03
CDY35528	Canola	cytosol	16.61	34.81

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	GO:A0A078JCP9	UniProt:A0A078JCP9	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
EnsemblPlants:CDY65403	ProteinID:CDY65403	ProteinID:CDY65403.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00045755001	InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF185	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix
UniParc:UPI0004EEEC19	SEG:seg	:	:	:	:

Description

BnaC06g42210DProbable aquaporin NIP4-2 [Source:Projected from Arabidopsis thaliana (AT5G37820) UniProtKB/Swiss-Prot;Acc:Q8W036]

Coordinates

chrLK034768:-:4981..8523

Molecular Weight (calculated)

30344.8 Da

IEP (calculated)

8.698

GRAVY (calculated)

0.705

Length

283 amino acids

Sequence
(BLAST)

001: MTSHGEGIEE EKISRIEKGI EKDCHGGIER VICSSPSIVC LTQKPPQYVL IAELIGTYFI IFSGCGVVVV NVLYGGKVTF PGICVTWGLI VMVMIYSIGH
101: ISGAHFNPAV TITFAVFRRF PWYQVPLYIG AQLSGSLLAS LILRLMFNVT PEAFFGTTPA DSVARALVAE IIISFLLMFV ISGVATDSRA IGELAGIAVG
201: MTIILNVFVA GPISGASMNP ARSLGPAIVM GVYKGIWIYI VGPIVGIMAG GFVYNFIRFT DKPLRELTKS ASFLRSASPG PNR

Best Arabidopsis Sequence Match ( AT5G37820.2 )
(BLAST)

001: MYKSSSTSKF STHQKFQFLF YFSPNKKLTS TFFLKKMTSH GEEIEDEQIS RIEKGNCKDS QGGMETAICS SPSIVCLTQK LIAEMIGTYF IIFSGCGVVV
101: VNVLYGGTIT FPGICVTWGL IVMVMIYSTG HISGAHFNPA VTVTFAVFRR FPWYQVPLYI GAQLTGSLLA SLTLRLMFNV TPKAFFGTTP TDSSGQALVA
201: EIIISFLLMF VISGVATDSR ATGELAGIAV GMTIILNVFV AGPISGASMN PARSLGPAIV MGRYKGIWVY IVGPFVGIFA GGFVYNFMRF TDKPLRELTK
301: SASFLRSVAQ KDNASKSDG

Arabidopsis Description

NIP4;2NOD26-like intrinsic protein 4;2 [Source:TAIR;Acc:AT5G37820]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.