Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G041600.1 | Wheat | plasma membrane | 94.79 | 94.79 |
| TraesCS3A01G008700.1 | Wheat | plasma membrane | 94.1 | 94.1 |
| Os01t0112400-01 | Rice | plasma membrane | 64.24 | 64.69 |
| HORVU3Hr1G001320.1 | Barley | plasma membrane, vacuole | 60.76 | 63.18 |
| EES00431 | Sorghum | plasma membrane | 59.38 | 59.17 |
| Zm00001d040108_P001 | Maize | plasma membrane | 59.72 | 57.53 |
| HORVU3Hr1G001420.2 | Barley | nucleus | 28.82 | 38.07 |
| TraesCS5D01G347600.1 | Wheat | cytosol, golgi, plasma membrane | 30.9 | 30.9 |
| TraesCS3D01G139400.1 | Wheat | plasma membrane | 26.39 | 30.65 |
| TraesCS7D01G299300.1 | Wheat | plasma membrane | 24.65 | 30.21 |
| TraesCS7D01G217400.1 | Wheat | plasma membrane | 28.47 | 29.5 |
| TraesCS7D01G539500.1 | Wheat | cytosol, golgi, plasma membrane | 29.51 | 29.21 |
| TraesCS3D01G330000.1 | Wheat | plasma membrane | 24.31 | 28.46 |
| TraesCS7D01G367800.1 | Wheat | golgi, peroxisome, plasma membrane | 26.04 | 26.88 |
| Solyc01g079890.2.1 | Tomato | plasma membrane | 26.39 | 26.76 |
| TraesCS1D01G176000.1 | Wheat | plastid | 27.78 | 26.76 |
| PGSC0003DMT400084932 | Potato | plasma membrane | 26.39 | 26.48 |
| TraesCS7D01G188800.2 | Wheat | plasma membrane | 27.43 | 26.33 |
| TraesCS4D01G349700.1 | Wheat | plasma membrane | 23.61 | 26.25 |
| KRH32130 | Soybean | plasma membrane | 24.65 | 25.72 |
| VIT_05s0020g02740.t01 | Wine grape | plasma membrane | 26.04 | 25.6 |
| TraesCS6D01G286400.1 | Wheat | golgi, peroxisome, plasma membrane | 26.04 | 25.42 |
| Bra020777.1-P | Field mustard | plasma membrane | 23.96 | 25.37 |
| CDY05231 | Canola | plasma membrane | 23.96 | 25.37 |
| CDY27709 | Canola | plasma membrane | 23.96 | 25.37 |
| AT3G06100.1 | Thale cress | plasma membrane | 23.96 | 25.09 |
| TraesCS6D01G072000.1 | Wheat | plasma membrane | 24.31 | 24.56 |
| KRH71310 | Soybean | plasma membrane | 24.65 | 23.99 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 |
| InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF182 | SUPFAM:SSF81338 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3D01G002300 | EnsemblPlants:TraesCS3D01G002300.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:1109698..1110822
Molecular Weight (calculated)
29779.7 Da
IEP (calculated)
9.565
GRAVY (calculated)
0.640
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLGKTNTVV GDGAANGQDL EQARRGQELP PAAGHATKGL AVGHLIRELL LEGVATFLVV FWSCVAALMQ EMHHGLTFPT VCLVVALTVA FVLGWMGPAH
101: LNPAVTFTFA AFRYFPWRKL PLYVATQIGA SVLACLSVNA IMTPHDDNFY GTAPRPPGAG ARLPFLLELL ASAVLMIVIS TVATSNASKA VVGISIGTAV
201: GTLGLVIGPV SGGSMNPARS LGPAIVFGRY TSIWIYVVAP VAGMLLGALF NKAVRQSDAI VGFLCGGRGA SSRVVIVGRS VTGAPGTN
101: LNPAVTFTFA AFRYFPWRKL PLYVATQIGA SVLACLSVNA IMTPHDDNFY GTAPRPPGAG ARLPFLLELL ASAVLMIVIS TVATSNASKA VVGISIGTAV
201: GTLGLVIGPV SGGSMNPARS LGPAIVFGRY TSIWIYVVAP VAGMLLGALF NKAVRQSDAI VGFLCGGRGA SSRVVIVGRS VTGAPGTN
001: MTSHGEEIED EQISRIEKGN CKDSQGGMET AICSSPSIVC LTQKLIAEMI GTYFIIFSGC GVVVVNVLYG GTITFPGICV TWGLIVMVMI YSTGHISGAH
101: FNPAVTVTFA VFRRFPWYQV PLYIGAQLTG SLLASLTLRL MFNVTPKAFF GTTPTDSSGQ ALVAEIIISF LLMFVISGVA TDSRATGELA GIAVGMTIIL
201: NVFVAGPISG ASMNPARSLG PAIVMGRYKG IWVYIVGPFV GIFAGGFVYN FMRFTDKPLR ELTKSASFLR SVAQKDNASK SDG
101: FNPAVTVTFA VFRRFPWYQV PLYIGAQLTG SLLASLTLRL MFNVTPKAFF GTTPTDSSGQ ALVAEIIISF LLMFVISGVA TDSRATGELA GIAVGMTIIL
201: NVFVAGPISG ASMNPARSLG PAIVMGRYKG IWVYIVGPFV GIFAGGFVYN FMRFTDKPLR ELTKSASFLR SVAQKDNASK SDG
Arabidopsis Description
NIP4;2NOD26-like intrinsic protein 4;2 [Source:TAIR;Acc:AT5G37820]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.