Factsheet for TraesCS4D01G349700.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, plasma membrane, plastid
ChloroP:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G525500.1	Wheat	plasma membrane	95.75	95.75
TraesCS3D01G330000.1	Wheat	plasma membrane	79.15	83.33
Os08t0152100-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	62.16	75.94
TraesCS7D01G299300.1	Wheat	plasma membrane	53.67	59.15
OQU79872	Sorghum	cytosol, peroxisome, vacuole	66.41	57.91
Os08t0152000-01	Rice	cytosol, plasma membrane, plastid	66.41	56.39
TraesCS6D01G072000.1	Wheat	plasma membrane	57.14	51.93
Os12t0204100-01	Rice	cytosol, peroxisome, plastid	55.98	49.83
TraesCS5D01G347600.1	Wheat	cytosol, golgi, plasma membrane	41.7	37.5
TraesCS1D01G176000.1	Wheat	plastid	42.47	36.79
TraesCS3D01G139400.1	Wheat	plasma membrane	35.14	36.69
TraesCS7D01G539500.1	Wheat	cytosol, golgi, plasma membrane	39.38	35.05
TraesCS7D01G217400.1	Wheat	plasma membrane	35.91	33.45
TraesCS7D01G367800.1	Wheat	golgi, peroxisome, plasma membrane	32.82	30.47
TraesCS6D01G286400.1	Wheat	golgi, peroxisome, plasma membrane	34.36	30.17
TraesCS7D01G188800.2	Wheat	plasma membrane	33.98	29.33
TraesCS3D01G002300.1	Wheat	plasma membrane	26.25	23.61

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF159	SUPFAM:SSF81338	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4D01G349700	EnsemblPlants:TraesCS4D01G349700.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:502536882..502538217

Molecular Weight (calculated)

27154.0 Da

IEP (calculated)

9.121

GRAVY (calculated)

0.748

Length

259 amino acids

Sequence
(BLAST)

001: MGSMIVPMEP IHHVDGNGDP PPPSSEPDST RPRRRRPKFP NMAAVPLVKK VTAEFLGTFI LMFIQVSSII MDEQHHCVVG LMGIAVSVGL AVMVLVFSII
101: HISGCHLNPA VSIAMGVFGH LPPAHLVPYI VAQVLGSTAA SFAGKAIYHP VNPGITTIPS VGTVEAFAVE FIITFILLFV IIAVATDPHA VKKLIAVAVG
201: ATVVMNILIA GPSTGASMNP ARTIGPAIAT GRYTKIWVYL VAEPLGAIAG VGSYMAIKL

Best Arabidopsis Sequence Match ( AT1G31885.1 )
(BLAST)

001: MAEISDITTQ TQTVVLDIEN YQSIDDSRSS DLSAPLVSVS FVQKLIGEFV GTFTMIFAGC SAIVVNETYG KPVTLPGIAL VWGLVVTVMI YSIGHVSGAH
101: FNPAVSIAFA SSKKFPFNQV PGYIAAQLLG STLAAAVLRL VFHLDDDVCS LKGDVYVGTY PSNSNTTSFV MEFIATFNLM FVISAVATDK RATGSFAGIA
201: IGATIVLDIL FSGPISGASM NPARSLGPAL IWGCYKDLWL YIVSPVIGAL SGAWTYGLLR STKKSYSEII RPNCNKVSSR DRQEASQDEI CVLRVVDPAN
301: QNYFICSSPT DINGKCNVTC KLA

Arabidopsis Description

NIP3-1Aquaporin NIP3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6T0]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.