Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G335900.1 | Wheat | golgi, peroxisome, plasma membrane | 99.66 | 99.66 |
| TraesCS6A01G307300.1 | Wheat | endoplasmic reticulum, golgi, peroxisome | 99.32 | 99.32 |
| HORVU0Hr1G017130.2 | Barley | endoplasmic reticulum, golgi, peroxisome | 44.75 | 88.0 |
| Zm00001d018037_P001 | Maize | cytosol, peroxisome, plasma membrane | 86.44 | 86.44 |
| EES07262 | Sorghum | cytosol, peroxisome, plasma membrane | 86.78 | 86.2 |
| Zm00001d052261_P001 | Maize | cytosol, plasma membrane, plastid | 61.02 | 85.31 |
| Os02t0745100-01 | Rice | plasma membrane, vacuole | 82.71 | 81.88 |
| TraesCS7D01G188800.2 | Wheat | plasma membrane | 77.63 | 76.33 |
| HORVU6Hr1G075850.4 | Barley | nucleus, plasma membrane, vacuole | 77.29 | 71.7 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 63.05 | 63.48 |
| GSMUA_Achr5P23340_001 | Banana | peroxisome | 61.02 | 61.43 |
| GSMUA_Achr9P27460_001 | Banana | cytosol, peroxisome, plasma membrane | 59.32 | 58.14 |
| VIT_14s0108g00700.t01 | Wine grape | peroxisome | 57.29 | 57.48 |
| PGSC0003DMT400035640 | Potato | endoplasmic reticulum, extracellular | 33.9 | 56.18 |
| GSMUA_Achr6P02660_001 | Banana | cytosol, endoplasmic reticulum, golgi, mitochondrion | 61.36 | 56.04 |
| Solyc03g013340.2.1 | Tomato | cytosol | 52.54 | 54.77 |
| PGSC0003DMT400035638 | Potato | cytosol, golgi, plasma membrane | 21.69 | 48.48 |
| KRH01175 | Soybean | plastid | 46.44 | 46.44 |
| KRH40096 | Soybean | plastid | 46.1 | 46.42 |
| TraesCS5D01G347600.1 | Wheat | cytosol, golgi, plasma membrane | 38.98 | 39.93 |
| TraesCS7D01G217400.1 | Wheat | plasma membrane | 37.63 | 39.93 |
| TraesCS1D01G176000.1 | Wheat | plastid | 39.66 | 39.13 |
| TraesCS7D01G539500.1 | Wheat | cytosol, golgi, plasma membrane | 38.31 | 38.83 |
| TraesCS3D01G139400.1 | Wheat | plasma membrane | 32.54 | 38.71 |
| TraesCS7D01G367800.1 | Wheat | golgi, peroxisome, plasma membrane | 34.92 | 36.92 |
| TraesCS7D01G299300.1 | Wheat | plasma membrane | 29.15 | 36.6 |
| TraesCS3D01G330000.1 | Wheat | plasma membrane | 29.15 | 34.96 |
| TraesCS4D01G349700.1 | Wheat | plasma membrane | 30.17 | 34.36 |
| TraesCS6D01G072000.1 | Wheat | plasma membrane | 31.86 | 32.98 |
| TraesCS3D01G002300.1 | Wheat | plasma membrane | 25.42 | 26.04 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015115 |
| GO:GO:0015267 | GO:GO:0015708 | GO:GO:0016020 | GO:GO:0030312 | GO:GO:0048226 | GO:GO:0055085 |
| InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF142 | SUPFAM:SSF81338 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6D01G286400 | EnsemblPlants:TraesCS6D01G286400.1 |
| TIGR:cd00333 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:394920062..394923004
Molecular Weight (calculated)
31662.3 Da
IEP (calculated)
7.342
GRAVY (calculated)
0.422
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNSRSNSR ATFSSEIHDI GTVQNSTTPS MVYYTERSIA DYFPPHLLKK VVSEVVSTFL LVFVTCGAAA ISAHDVTRIS QLGQSVAGGL IVVVMIYAVG
101: HISGAHMNPA VTLAFAIFRH FPWIQVPFYW AAQFTGAICA SFVLKAVLHP ITVIGTTEPV GPHWHALVIE VVVTFNMMFV TLAVATDTRA VGELAGLAVG
201: SSVCITSIFA GAVSGGSMNP ARTLGPALAS NRYPGLWLYF LGPVLGTLSG AWTYTYIRFE DPPKDGPQKL SSFKLRRLQS QSVAADDDEL DHIPV
101: HISGAHMNPA VTLAFAIFRH FPWIQVPFYW AAQFTGAICA SFVLKAVLHP ITVIGTTEPV GPHWHALVIE VVVTFNMMFV TLAVATDTRA VGELAGLAVG
201: SSVCITSIFA GAVSGGSMNP ARTLGPALAS NRYPGLWLYF LGPVLGTLSG AWTYTYIRFE DPPKDGPQKL SSFKLRRLQS QSVAADDDEL DHIPV
001: MDHEEIPSTP STPATTPGTP GAPLFGGFEG KRNGHNGRYT PKSLLKSCKC FSVDNEWALE DGRLPPVTCS LPPPNVSLYR KLGAEFVGTL ILIFAGTATA
101: IVNQKTDGAE TLIGCAASAG LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER
301: RSFRR
101: IVNQKTDGAE TLIGCAASAG LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER
301: RSFRR
Arabidopsis Description
NIP6-1Aquaporin NIP6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI4]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.