Factsheet for TraesCS6A01G307300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, endoplasmic reticulum, peroxisome

Predictor Summary:

mitochondrion 1
golgi 2
extracellular 1
plasma membrane 1
endoplasmic reticulum 2
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, peroxisome
Any Predictor:	endoplasmic reticulum, golgi, peroxisome
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G286400.1	Wheat	golgi, peroxisome, plasma membrane	99.32	99.32
TraesCS6B01G335900.1	Wheat	golgi, peroxisome, plasma membrane	98.98	98.98
HORVU0Hr1G017130.2	Barley	endoplasmic reticulum, golgi, peroxisome	44.41	87.33
Zm00001d018037_P001	Maize	cytosol, peroxisome, plasma membrane	86.78	86.78
EES07262	Sorghum	cytosol, peroxisome, plasma membrane	86.78	86.2
Zm00001d052261_P001	Maize	cytosol, plasma membrane, plastid	61.02	85.31
Os02t0745100-01	Rice	plasma membrane, vacuole	82.37	81.54
TraesCS7A01G187800.1	Wheat	endoplasmic reticulum, golgi, peroxisome	78.31	77.0
HORVU6Hr1G075850.4	Barley	nucleus, plasma membrane, vacuole	76.95	71.38
GSMUA_Achr10P...	Banana	endoplasmic reticulum, peroxisome, plasma membrane	63.05	63.48
GSMUA_Achr5P23340_001	Banana	peroxisome	60.68	61.09
GSMUA_Achr9P27460_001	Banana	cytosol, peroxisome, plasma membrane	58.98	57.81
VIT_14s0108g00700.t01	Wine grape	peroxisome	57.29	57.48
PGSC0003DMT400035640	Potato	endoplasmic reticulum, extracellular	33.9	56.18
GSMUA_Achr6P02660_001	Banana	cytosol, endoplasmic reticulum, golgi, mitochondrion	61.36	56.04
Solyc03g013340.2.1	Tomato	cytosol	52.54	54.77
PGSC0003DMT400035638	Potato	cytosol, golgi, plasma membrane	21.69	48.48
KRH01175	Soybean	plastid	46.1	46.1
KRH40096	Soybean	plastid	45.76	46.08
TraesCS7A01G215700.1	Wheat	plasma membrane	38.31	40.65
TraesCS5A01G342900.1	Wheat	golgi, peroxisome, plasma membrane	39.66	40.48
TraesCS7A01G553000.1	Wheat	cytosol, golgi, plasma membrane	38.31	38.97
TraesCS1A01G177500.1	Wheat	plastid	39.32	38.67
TraesCS7A01G355000.1	Wheat	peroxisome	34.24	36.2
TraesCS5A01G525500.1	Wheat	plasma membrane	30.17	34.36
TraesCS3A01G139100.3	Wheat	plasma membrane	33.56	34.02
TraesCS7A01G303800.1	Wheat	plasma membrane	31.19	33.95
TraesCS6A01G078300.1	Wheat	plasma membrane	31.86	32.98
TraesCS3A01G008700.1	Wheat	plasma membrane	26.44	27.08

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150	GO:GO:0015115
GO:GO:0015267	GO:GO:0015708	GO:GO:0016020	GO:GO:0030312	GO:GO:0048226	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF142	SUPFAM:SSF81338	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6A01G307300	EnsemblPlants:TraesCS6A01G307300.1
TIGR:cd00333	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:541399921..541402864

Molecular Weight (calculated)

31606.2 Da

IEP (calculated)

7.342

GRAVY (calculated)

0.442

Length

295 amino acids

Sequence
(BLAST)

001: MATNSRSNSR ATFSSEIHDI GTVQNSATPS MVYYTERSIA DYFPPHLLKK VVSEVVSTFL LVFVTCGAAA ISAHDVTRIS QLGQSVAGGL IVVVMIYAVG
101: HISGAHMNPA VTLAFAIFRH FPWIQVPFYW AAQFTGAICA SFVLKAVLHP ITVIGTTEPV GPHWHALVIE VVVTFNMMFV TLAVATDTRA VGELAGLAVG
201: SSVCITSIFA GAVSGGSMNP ARTLGPALAS NRYPGLWLYF LGPVLGTLSG AWTYTYIRFE DAPKDGPQKL SSFKLRRLQS QSVAADDDEL DHIPV

Best Arabidopsis Sequence Match ( AT1G80760.1 )
(BLAST)

001: MDHEEIPSTP STPATTPGTP GAPLFGGFEG KRNGHNGRYT PKSLLKSCKC FSVDNEWALE DGRLPPVTCS LPPPNVSLYR KLGAEFVGTL ILIFAGTATA
101: IVNQKTDGAE TLIGCAASAG LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER
301: RSFRR

Arabidopsis Description

NIP6-1Aquaporin NIP6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI4]
SUBAcon: [golgi,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.