Subcellular Localization
min:
: max
Winner_takes_all: vacuole, plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- vacuole 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G017130.2 | Barley | endoplasmic reticulum, golgi, peroxisome | 42.45 | 90.0 |
| Zm00001d052261_P001 | Maize | cytosol, plasma membrane, plastid | 56.29 | 84.83 |
| TraesCS6D01G286400.1 | Wheat | golgi, peroxisome, plasma membrane | 71.7 | 77.29 |
| TraesCS6B01G335900.1 | Wheat | golgi, peroxisome, plasma membrane | 71.7 | 77.29 |
| TraesCS6A01G307300.1 | Wheat | endoplasmic reticulum, golgi, peroxisome | 71.38 | 76.95 |
| Zm00001d018037_P001 | Maize | cytosol, peroxisome, plasma membrane | 61.01 | 65.76 |
| EES07262 | Sorghum | cytosol, peroxisome, plasma membrane | 61.32 | 65.66 |
| Os02t0745100-01 | Rice | plasma membrane, vacuole | 61.32 | 65.44 |
| HORVU7Hr1G038220.1 | Barley | endoplasmic reticulum, golgi, peroxisome | 56.6 | 60.0 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 47.48 | 51.54 |
| GSMUA_Achr5P23340_001 | Banana | peroxisome | 46.54 | 50.51 |
| PGSC0003DMT400035638 | Potato | cytosol, golgi, plasma membrane | 20.44 | 49.24 |
| GSMUA_Achr9P27460_001 | Banana | cytosol, peroxisome, plasma membrane | 46.54 | 49.17 |
| VIT_14s0108g00700.t01 | Wine grape | peroxisome | 44.03 | 47.62 |
| Solyc03g013340.2.1 | Tomato | cytosol | 41.51 | 46.64 |
| GSMUA_Achr6P02660_001 | Banana | cytosol, endoplasmic reticulum, golgi, mitochondrion | 46.54 | 45.82 |
| HORVU7Hr1G038270.3 | Barley | endoplasmic reticulum, golgi, vacuole | 51.89 | 45.08 |
| PGSC0003DMT400035640 | Potato | endoplasmic reticulum, extracellular | 22.96 | 41.01 |
| KRH01175 | Soybean | plastid | 36.79 | 39.66 |
| KRH40096 | Soybean | plastid | 36.48 | 39.59 |
| HORVU3Hr1G014440.3 | Barley | golgi, mitochondrion, plasma membrane | 25.47 | 31.4 |
| HORVU3Hr1G079560.5 | Barley | golgi, plasma membrane | 24.21 | 31.17 |
| HORVU7Hr1G121250.3 | Barley | cytosol, golgi, plasma membrane | 28.62 | 31.16 |
| HORVU1Hr1G047100.3 | Barley | plastid | 33.02 | 28.61 |
| HORVU7Hr1G043590.2 | Barley | plasma membrane | 27.67 | 28.48 |
| HORVU5Hr1G085710.3 | Barley | cytosol, peroxisome, plasma membrane | 29.56 | 28.23 |
| HORVU7Hr1G043600.1 | Barley | golgi, peroxisome | 27.67 | 27.59 |
| HORVU7Hr1G088900.1 | Barley | cytosol, golgi, plasma membrane | 17.3 | 26.07 |
| HORVU3Hr1G001320.1 | Barley | plasma membrane, vacuole | 16.67 | 19.13 |
| HORVU3Hr1G001420.2 | Barley | nucleus | 9.12 | 13.3 |
| HORVU7Hr1G072160.1 | Barley | extracellular, golgi | 3.14 | 12.05 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | UniProt:A0A287UQY0 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | EnsemblPlantsGene:HORVU6Hr1G075850 | EnsemblPlants:HORVU6Hr1G075850.4 | InterPro:IPR023271 | InterPro:MIP |
| InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF142 |
| SUPFAM:SSF81338 | TMHMM:TMhelix | UniParc:UPI000B47A95E | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr6H:-:522296368..522299781
Molecular Weight (calculated)
34033.4 Da
IEP (calculated)
9.282
GRAVY (calculated)
0.268
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNSRSNSR ATFSSEIHDI GTVQNSTTPS MVYYTERSIA DYFPPHLLKK VVSEVVSTFL LVFVTCGAAA ISAHDVTRIS QLGQSVAGGL IVVVMIYAVG
101: HISGAHMNPA VTLAFAIFRH FPWIQVPFYW AAQFTGAICA SFVLKAVLHP ITVIGTTEPV GPHWHALVIE VVVTFNMMFV TLAVATDTRA VGELAGLAVG
201: SSVCITSIFA GGGVRWIDEP GEDAGPGAGE QPLPWPLALL PGTRPWHAQR GLDLHLHPLR GPAQGRAPEA LLLQAPAAAE PVRRRRRRRA RPHPRLILPP
301: PPSSPPGRTD LPVCVLGT
101: HISGAHMNPA VTLAFAIFRH FPWIQVPFYW AAQFTGAICA SFVLKAVLHP ITVIGTTEPV GPHWHALVIE VVVTFNMMFV TLAVATDTRA VGELAGLAVG
201: SSVCITSIFA GGGVRWIDEP GEDAGPGAGE QPLPWPLALL PGTRPWHAQR GLDLHLHPLR GPAQGRAPEA LLLQAPAAAE PVRRRRRRRA RPHPRLILPP
301: PPSSPPGRTD LPVCVLGT
001: MAPPEAEVGA VMVMAPPTPG TPGTPGGPLI TGMRVDSMSF DHRKPTPRCK CLPVMGSTWG QHDTCFTDFP SPDVSLTRKL GAEFVGTFIL IFTATAGPIV
101: NQKYDGAETL IGNAACAGLA VMIIILSTGH ISGAHLNPSL TIAFAALRHF PWAHVPAYIA AQVSASICAS FALKGVFHPF MSGGVTIPSV SLGQAFALEF
201: IITFILLFVV TAVATDTRAV GELAGIAVGA TVMLNILVAG PSTGGSMNPV RTLGPAVASG NYRSLWVYLV APTLGAISGA AVYTGVKLND SVTDPPRPVR
301: SFRR
101: NQKYDGAETL IGNAACAGLA VMIIILSTGH ISGAHLNPSL TIAFAALRHF PWAHVPAYIA AQVSASICAS FALKGVFHPF MSGGVTIPSV SLGQAFALEF
201: IITFILLFVV TAVATDTRAV GELAGIAVGA TVMLNILVAG PSTGGSMNPV RTLGPAVASG NYRSLWVYLV APTLGAISGA AVYTGVKLND SVTDPPRPVR
301: SFRR
Arabidopsis Description
NIP5-1At4g10380 [Source:UniProtKB/TrEMBL;Acc:A3KPG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.