CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
plastid 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018037_P001	Maize	cytosol, peroxisome, plasma membrane	96.63	97.29
Zm00001d052261_P001	Maize	cytosol, plasma membrane, plastid	67.0	94.31
TraesCS6B01G335900.1	Wheat	golgi, peroxisome, plasma membrane	86.53	87.12
TraesCS6A01G307300.1	Wheat	endoplasmic reticulum, golgi, peroxisome	86.2	86.78
TraesCS6D01G286400.1	Wheat	golgi, peroxisome, plasma membrane	86.2	86.78
Os02t0745100-01	Rice	plasma membrane, vacuole	82.83	82.55
EER89472	Sorghum	cytosol, plasma membrane, plastid	78.45	78.98
HORVU0Hr1G017130.2	Barley	endoplasmic reticulum, golgi, peroxisome	37.37	74.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum, peroxisome, plasma membrane	62.29	63.14
GSMUA_Achr5P23340_001	Banana	peroxisome	60.94	61.77
HORVU6Hr1G075850.4	Barley	nucleus, plasma membrane, vacuole	65.66	61.32
GSMUA_Achr9P27460_001	Banana	cytosol, peroxisome, plasma membrane	59.6	58.8
VIT_14s0108g00700.t01	Wine grape	peroxisome	56.57	57.14
PGSC0003DMT400035640	Potato	endoplasmic reticulum, extracellular	33.67	56.18
GSMUA_Achr6P02660_001	Banana	cytosol, endoplasmic reticulum, golgi, mitochondrion	60.94	56.04
Solyc03g013340.2.1	Tomato	cytosol	52.19	54.77
PGSC0003DMT400035638	Potato	cytosol, golgi, plasma membrane	21.55	48.48
KRH01175	Soybean	plastid	45.79	46.1
KRH40096	Soybean	plastid	45.45	46.08
OQU77604	Sorghum	plasma membrane	39.06	40.99
EER91378	Sorghum	plastid	41.08	40.53
EES06549	Sorghum	cytoskeleton, cytosol, peroxisome	39.06	40.42
KXG31601	Sorghum	golgi, plasma membrane, plastid	35.02	36.88
KXG20157	Sorghum	golgi, nucleus, plasma membrane	33.33	34.02
OQU79872	Sorghum	cytosol, peroxisome, vacuole	31.99	31.99
EES14542	Sorghum	golgi, peroxisome, vacuole	30.98	31.83
KXG24412	Sorghum	vacuole	27.95	26.95
EES00431	Sorghum	plasma membrane	25.25	25.95

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	EntrezGene:8066437	UniProt:A9XG44	ProteinID:AIP93582.1	InterPro:Aquaporin-like
InterPro:Aquaporin_transptr	EnsemblPlants:EES07262	ProteinID:EES07262	ProteinID:EES07262.1	EMBL:EF373651	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887
GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0015115	GO:GO:0015250	GO:GO:0015267
GO:GO:0015708	GO:GO:0016020	GO:GO:0016021	GO:GO:0030312	GO:GO:0034220	GO:GO:0048226
GO:GO:0055085	InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF142	EnsemblPlantsGene:SORBI_3004G238100	SUPFAM:SSF81338	unigene:Sbi.1124
TMHMM:TMhelix	UniParc:UPI000162D524	RefSeq:XP_002454286.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:58614722..58618581

Molecular Weight (calculated)

32038.7 Da

IEP (calculated)

7.322

GRAVY (calculated)

0.366

Length

297 amino acids

Sequence
(BLAST)

001: MSTNSRSNSR ANFNNEIHDI GTVQNSTMMP PTYYDRSLAD IFPPHLLKKV VSEVVSTFLL VFVTCGAAGI YGSDKDRISQ LGQSVAGGLI VTVMIYAVGH
101: ISGAHMNPAV TLAFAVFRHF PWIQVPFYWA AQFTGAICAS FVLKAVLHPI SVLGCTTPTG PHWHSLIIEI IVTFNMMFVT LAVATDTRAV GELAGLAVGS
201: AVCITSIFAG AVSGGSMNPA RTLGPALASN LYTGLWIYFL GPVLGTLSGA WTYTYIRFEE APSTHKDMSQ KLSSFKLRRL QSQSVAAEDD ELDHIQV

Best Arabidopsis Sequence Match ( AT1G80760.1 )
(BLAST)

001: MDHEEIPSTP STPATTPGTP GAPLFGGFEG KRNGHNGRYT PKSLLKSCKC FSVDNEWALE DGRLPPVTCS LPPPNVSLYR KLGAEFVGTL ILIFAGTATA
101: IVNQKTDGAE TLIGCAASAG LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER
301: RSFRR

Arabidopsis Description

NIP6-1Aquaporin NIP6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI4]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.