CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G156700.1	Wheat	plasma membrane	67.73	71.27
Os01t0202800-00	Rice	cytosol, plasma membrane, plastid	67.38	71.16
OQU77604	Sorghum	plasma membrane	70.92	70.67
TraesCS3A01G139100.3	Wheat	plasma membrane	68.09	65.98
EES06549	Sorghum	cytoskeleton, cytosol, peroxisome	62.77	61.67
TraesCS3D01G139400.1	Wheat	plasma membrane	52.48	59.68
KXG20157	Sorghum	golgi, nucleus, plasma membrane	48.94	47.42
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	34.04	38.1
EER91378	Sorghum	plastid	40.43	37.87
EES07262	Sorghum	cytosol, peroxisome, plasma membrane	36.88	35.02
EER89472	Sorghum	cytosol, plasma membrane, plastid	36.52	34.92
OQU79872	Sorghum	cytosol, peroxisome, vacuole	34.4	32.66
EES00431	Sorghum	plasma membrane	31.91	31.14
EES14542	Sorghum	golgi, peroxisome, vacuole	30.85	30.1
KXG24412	Sorghum	vacuole	27.3	25.0

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	UniProt:A0A1B6Q107	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	EnsemblPlants:KXG31601	ProteinID:KXG31601	ProteinID:KXG31601.1
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF184	EnsemblPlantsGene:SORBI_3003G026400	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI00081AC10C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:2231972..2234369

Molecular Weight (calculated)

29267.4 Da

IEP (calculated)

8.473

GRAVY (calculated)

0.523

Length

282 amino acids

Sequence
(BLAST)

001: MSGRASAAAG AMEEGQAGYQ SSEDGSHGSG SASNRCNDDM ISVQFMQKII AEVLGTYFMI FAGCGSVVVN LSTNGTVTFP GICAVWGLVV MVLVYSVGHI
101: SGAHFNPAVT VAFATCGRFP WKQVPSYAVA QVLGSTLASL TLRVVFGGAT AHEHFFGTAP SGTVAQAVVL EFVISFYLMF VVSGVATDNR AIGELAGLAV
201: GATVLLNVLV AGPITGASMN PARTLGPAIV AGRYRSIWVY MVGPVCGTVT GAWAYNLVRF TDKPLREITK SGSFLRATGR TS

Best Arabidopsis Sequence Match ( AT4G18910.1 )
(BLAST)

001: MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ QAIHKPLKKQ DSLLSISVPF LQKLMAEVLG TYFLIFAGCA AVAVNTQHDK AVTLPGIAIV WGLTVMVLVY
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR

Arabidopsis Description

NIP1-2Aquaporin NIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFP7]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.