CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, vacuole

Predictor Summary:

plastid 2
golgi 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, vacuole
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049578_P001	Maize	golgi, plasma membrane, vacuole	78.2	76.35
HORVU7Hr1G072160.1	Barley	extracellular, golgi	21.11	73.49
TraesCS7D01G299300.1	Wheat	plasma membrane	55.02	67.66
TraesCS7A01G303800.1	Wheat	plasma membrane	61.59	65.68
TraesCS7B01G204200.1	Wheat	plasma membrane, plastid, vacuole	61.25	63.9
TraesCS6A01G078300.1	Wheat	plasma membrane	62.98	63.86
TraesCS6D01G072000.1	Wheat	plasma membrane	62.28	63.16
TraesCS6B01G105300.1	Wheat	golgi, plasma membrane, vacuole	61.59	63.12
OQU79872	Sorghum	cytosol, peroxisome, vacuole	54.33	52.86
KXG24412	Sorghum	vacuole	43.25	40.58
EER91378	Sorghum	plastid	38.06	36.54
OQU77604	Sorghum	plasma membrane	31.83	32.51
EES07262	Sorghum	cytosol, peroxisome, plasma membrane	31.83	30.98
KXG31601	Sorghum	golgi, plasma membrane, plastid	30.1	30.85
EES06549	Sorghum	cytoskeleton, cytosol, peroxisome	29.41	29.62
EER89472	Sorghum	cytosol, plasma membrane, plastid	30.1	29.49
KXG20157	Sorghum	golgi, nucleus, plasma membrane	28.37	28.18
EES00431	Sorghum	plasma membrane	24.22	24.22

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	EntrezGene:8076566	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	UniProt:C5YGT8
EnsemblPlants:EES14542	ProteinID:EES14542	ProteinID:EES14542.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150
GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF159	EnsemblPlantsGene:SORBI_3007G039500	SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI0001A87B6B
RefSeq:XP_002445047.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:3812660..3815360

Molecular Weight (calculated)

30008.0 Da

IEP (calculated)

9.007

GRAVY (calculated)

0.687

Length

289 amino acids

Sequence
(BLAST)

001: MDGRRRSVSS VDVSLSIPSA PAASMLVDKD NMSDDKISIF IPQRSPSNKI RPLGFQQNEA SNDPPPLSAK SMTLALIKKV VAEFLGTFLL IFTVVSALIM
101: NETHNGALGL LGVAATAGMA VVVIVSSIFH VSGGQLNPAV SVTMVVFGHL PPAHLVPYIV AQLLGSTAAS FVAKALYDPV NLGAIVATVP RIGAFEAFWV
201: EFITTFILLF VITALATDTR AVKELVAVGA GAAVMMSALI SGESTGASMN PARTLGTAIA TGIYTKIWIY VVAPPLGAIA GCGAYHALK

Best Arabidopsis Sequence Match ( AT1G31885.1 )
(BLAST)

001: MAEISDITTQ TQTVVLDIEN YQSIDDSRSS DLSAPLVSVS FVQKLIGEFV GTFTMIFAGC SAIVVNETYG KPVTLPGIAL VWGLVVTVMI YSIGHVSGAH
101: FNPAVSIAFA SSKKFPFNQV PGYIAAQLLG STLAAAVLRL VFHLDDDVCS LKGDVYVGTY PSNSNTTSFV MEFIATFNLM FVISAVATDK RATGSFAGIA
201: IGATIVLDIL FSGPISGASM NPARSLGPAL IWGCYKDLWL YIVSPVIGAL SGAWTYGLLR STKKSYSEII RPNCNKVSSR DRQEASQDEI CVLRVVDPAN
301: QNYFICSSPT DINGKCNVTC KLA

Arabidopsis Description

NIP3-1Aquaporin NIP3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6T0]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.