Factsheet for TraesCS6D01G072000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G078300.1	Wheat	plasma membrane	94.04	94.04
TraesCS6B01G105300.1	Wheat	golgi, plasma membrane, vacuole	92.63	93.62
TraesCS7D01G299300.1	Wheat	plasma membrane	60.0	72.77
EES14542	Sorghum	golgi, peroxisome, vacuole	63.16	62.28
Zm00001d049578_P001	Maize	golgi, plasma membrane, vacuole	61.4	59.12
TraesCS3D01G330000.1	Wheat	plasma membrane	49.47	57.32
TraesCS4D01G349700.1	Wheat	plasma membrane	51.93	57.14
TraesCS1D01G176000.1	Wheat	plastid	38.6	36.79
TraesCS5D01G347600.1	Wheat	cytosol, golgi, plasma membrane	35.09	34.72
TraesCS7D01G539500.1	Wheat	cytosol, golgi, plasma membrane	33.33	32.65
TraesCS7D01G217400.1	Wheat	plasma membrane	31.58	32.37
TraesCS6D01G286400.1	Wheat	golgi, peroxisome, plasma membrane	32.98	31.86
TraesCS3D01G139400.1	Wheat	plasma membrane	26.32	30.24
TraesCS7D01G188800.2	Wheat	plasma membrane	31.58	30.0
TraesCS7D01G367800.1	Wheat	golgi, peroxisome, plasma membrane	28.07	28.67
TraesCS3D01G002300.1	Wheat	plasma membrane	24.56	24.31

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF159	SUPFAM:SSF81338	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G072000	EnsemblPlants:TraesCS6D01G072000.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:36580997..36582105

Molecular Weight (calculated)

29389.2 Da

IEP (calculated)

7.954

GRAVY (calculated)

0.709

Length

285 amino acids

Sequence
(BLAST)

001: MEESRARGSA DISLNINPAF SMDSMSDARA TPVMMPRRST SVKIVPIASD DENEKSPSPD PRTAVVHLVK KAMAEFLGTF LLVFIVLSAV IMNQVHGGAL
101: GLLGVAATAG AAGVVIVASL FHVSGSHLNP SVSLAMAVFG YLPWAHLAPY VFAQFLGAVS ASFVAKAIYH PGPAVNLGAV VTTVPSIGTL EAFAVEFIIT
201: FILLFALLAP ATDPKAVKEL VAVAAGAALM MNVLIAAEST GASMNPARTL GTAIATGTYT KIWVYMVAPP LGAIAGTGAY IALKH

Best Arabidopsis Sequence Match ( AT1G80760.1 )
(BLAST)

001: MDHEEIPSTP STPATTPGTP GAPLFGGFEG KRNGHNGRYT PKSLLKSCKC FSVDNEWALE DGRLPPVTCS LPPPNVSLYR KLGAEFVGTL ILIFAGTATA
101: IVNQKTDGAE TLIGCAASAG LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER
301: RSFRR

Arabidopsis Description

NIP6-1Aquaporin NIP6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI4]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.