Factsheet for TraesCS3D01G139400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, secretory
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G156700.1	Wheat	plasma membrane	74.19	68.66
TraesCS3A01G139100.3	Wheat	plasma membrane	68.95	58.76
Os01t0202800-00	Rice	cytosol, plasma membrane, plastid	58.87	54.68
KXG31601	Sorghum	golgi, plasma membrane, plastid	59.68	52.48
TraesCS7D01G217400.1	Wheat	plasma membrane	54.84	48.92
TraesCS7D01G539500.1	Wheat	cytosol, golgi, plasma membrane	56.85	48.45
TraesCS5D01G347600.1	Wheat	cytosol, golgi, plasma membrane	56.05	48.26
TraesCS3D01G330000.1	Wheat	plasma membrane	37.9	38.21
TraesCS7D01G367800.1	Wheat	golgi, peroxisome, plasma membrane	42.34	37.63
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	36.29	35.71
TraesCS4D01G349700.1	Wheat	plasma membrane	36.69	35.14
TraesCS1D01G176000.1	Wheat	plastid	41.13	34.11
TraesCS6D01G286400.1	Wheat	golgi, peroxisome, plasma membrane	38.71	32.54
TraesCS7D01G188800.2	Wheat	plasma membrane	38.31	31.67
TraesCS7D01G299300.1	Wheat	plasma membrane	27.82	29.36
TraesCS3D01G002300.1	Wheat	plasma membrane	30.65	26.39
TraesCS6D01G072000.1	Wheat	plasma membrane	30.24	26.32

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF184	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G139400
EnsemblPlants:TraesCS3D01G139400.1	TIGR:cd00333	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:+:98882933..98883946

Molecular Weight (calculated)

26220.0 Da

IEP (calculated)

10.166

GRAVY (calculated)

0.363

Length

248 amino acids

Sequence
(BLAST)

001: MLSSTEPEQE GEVGRYRAQR IGQCTTNLTT PEPWKKGGTG RRPSLRVQRT GARICVVWGL VVMVMVYSVG HVSGAHFNPA VTIAFAACRR FPWKQVPSYV
101: LAQVLGSTLA SLTLRLTFGG AHGHLSGMTP SGSSTQGVAL EFIISFYLMF VVSGVATDDR AVGDLAGLAV GATVVLNVLF AGPITGASMN PARSLGPAIV
201: ACRYGGVWVY VVGPVCGTVA GAWTYNLIWL PYKPIARSGS TASFLRPL

Best Arabidopsis Sequence Match ( AT4G18910.1 )
(BLAST)

001: MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ QAIHKPLKKQ DSLLSISVPF LQKLMAEVLG TYFLIFAGCA AVAVNTQHDK AVTLPGIAIV WGLTVMVLVY
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR

Arabidopsis Description

NIP1-2Aquaporin NIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFP7]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.