Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G002300.1 | Wheat | plasma membrane | 94.1 | 94.1 |
| TraesCSU01G041600.1 | Wheat | plasma membrane | 93.75 | 93.75 |
| Os01t0112400-01 | Rice | plasma membrane | 62.85 | 63.29 |
| HORVU3Hr1G001320.1 | Barley | plasma membrane, vacuole | 60.42 | 62.82 |
| EES00431 | Sorghum | plasma membrane | 59.03 | 58.82 |
| Zm00001d040108_P001 | Maize | plasma membrane | 59.72 | 57.53 |
| HORVU3Hr1G001420.2 | Barley | nucleus | 28.82 | 38.07 |
| TraesCS5A01G342900.1 | Wheat | golgi, peroxisome, plasma membrane | 29.86 | 29.76 |
| TraesCS7A01G553000.1 | Wheat | cytosol, golgi, plasma membrane | 29.51 | 29.31 |
| TraesCS7A01G215700.1 | Wheat | plasma membrane | 27.78 | 28.78 |
| TraesCS3A01G139100.3 | Wheat | plasma membrane | 28.12 | 27.84 |
| TraesCS1A01G177500.1 | Wheat | plastid | 28.12 | 27.0 |
| TraesCS5A01G525500.1 | Wheat | plasma membrane | 23.96 | 26.64 |
| TraesCS6A01G307300.1 | Wheat | endoplasmic reticulum, golgi, peroxisome | 27.08 | 26.44 |
| TraesCS7A01G187800.1 | Wheat | endoplasmic reticulum, golgi, peroxisome | 27.43 | 26.33 |
| CDY27709 | Canola | plasma membrane | 24.65 | 26.1 |
| CDY05231 | Canola | plasma membrane | 24.65 | 26.1 |
| Bra020777.1-P | Field mustard | plasma membrane | 24.65 | 26.1 |
| Solyc01g079890.2.1 | Tomato | plasma membrane | 25.69 | 26.06 |
| TraesCS7A01G355000.1 | Wheat | peroxisome | 25.0 | 25.81 |
| PGSC0003DMT400084932 | Potato | plasma membrane | 25.69 | 25.78 |
| TraesCS6A01G078300.1 | Wheat | plasma membrane | 25.35 | 25.61 |
| VIT_05s0020g02740.t01 | Wine grape | plasma membrane | 26.04 | 25.6 |
| TraesCS7A01G303800.1 | Wheat | plasma membrane | 23.96 | 25.46 |
| AT3G06100.1 | Thale cress | plasma membrane | 23.96 | 25.09 |
| KRH32130 | Soybean | plasma membrane | 23.96 | 25.0 |
| KRH71310 | Soybean | plasma membrane | 24.65 | 23.99 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 |
| InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF182 | SUPFAM:SSF81338 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3A01G008700 | EnsemblPlants:TraesCS3A01G008700.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:8211619..8212751
Molecular Weight (calculated)
29853.8 Da
IEP (calculated)
9.550
GRAVY (calculated)
0.614
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDKTNTVG SDGAAKGQDL EQARRGQELP PPAGHATKGL AVGHLIRELV LEGVATFLVV FWSCVAALMQ EMHHSLTFPT VCLVVALTVA FVLGWMGPAH
101: LNPAVTFTFA AFRYFPWRKL PLYVATQIAA SVLACLSVNA IMSPHDDNFY GTVPRPPGAG ARLPFLLELL ASAVLMIVVS TVAMSNASKA VVGIAIGAAV
201: GTLGLVIGPV SGGSMNPARS LGPAIVFGRY TSIWIYVTAP VAGMLLGALF NKGVRQSDAI VGFLCGGRGA SSRVVVVGRS VTGAPGTN
101: LNPAVTFTFA AFRYFPWRKL PLYVATQIAA SVLACLSVNA IMSPHDDNFY GTVPRPPGAG ARLPFLLELL ASAVLMIVVS TVAMSNASKA VVGIAIGAAV
201: GTLGLVIGPV SGGSMNPARS LGPAIVFGRY TSIWIYVTAP VAGMLLGALF NKGVRQSDAI VGFLCGGRGA SSRVVVVGRS VTGAPGTN
001: MTSHGEEIED EQISRIEKGN CKDSQGGMET AICSSPSIVC LTQKLIAEMI GTYFIIFSGC GVVVVNVLYG GTITFPGICV TWGLIVMVMI YSTGHISGAH
101: FNPAVTVTFA VFRRFPWYQV PLYIGAQLTG SLLASLTLRL MFNVTPKAFF GTTPTDSSGQ ALVAEIIISF LLMFVISGVA TDSRATGELA GIAVGMTIIL
201: NVFVAGPISG ASMNPARSLG PAIVMGRYKG IWVYIVGPFV GIFAGGFVYN FMRFTDKPLR ELTKSASFLR SVAQKDNASK SDG
101: FNPAVTVTFA VFRRFPWYQV PLYIGAQLTG SLLASLTLRL MFNVTPKAFF GTTPTDSSGQ ALVAEIIISF LLMFVISGVA TDSRATGELA GIAVGMTIIL
201: NVFVAGPISG ASMNPARSLG PAIVMGRYKG IWVYIVGPFV GIFAGGFVYN FMRFTDKPLR ELTKSASFLR SVAQKDNASK SDG
Arabidopsis Description
NIP4;2NOD26-like intrinsic protein 4;2 [Source:TAIR;Acc:AT5G37820]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.