Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G002300.1 | Wheat | plasma membrane | 94.79 | 94.79 |
| TraesCS3A01G008700.1 | Wheat | plasma membrane | 93.75 | 93.75 |
| Os01t0112400-01 | Rice | plasma membrane | 64.24 | 64.69 |
| HORVU3Hr1G001320.1 | Barley | plasma membrane, vacuole | 60.42 | 62.82 |
| EES00431 | Sorghum | plasma membrane | 58.68 | 58.48 |
| Zm00001d040108_P001 | Maize | plasma membrane | 59.38 | 57.19 |
| HORVU3Hr1G001420.2 | Barley | nucleus | 29.17 | 38.53 |
| Solyc01g079890.2.1 | Tomato | plasma membrane | 26.39 | 26.76 |
| PGSC0003DMT400084932 | Potato | plasma membrane | 26.39 | 26.48 |
| Bra020777.1-P | Field mustard | plasma membrane | 24.65 | 26.1 |
| CDY05231 | Canola | plasma membrane | 24.65 | 26.1 |
| CDY27709 | Canola | plasma membrane | 24.65 | 26.1 |
| KRH32130 | Soybean | plasma membrane | 23.96 | 25.0 |
| AT3G06100.1 | Thale cress | plasma membrane | 23.61 | 24.73 |
| VIT_05s0020g02740.t01 | Wine grape | plasma membrane | 25.0 | 24.57 |
| KRH71310 | Soybean | plasma membrane | 23.96 | 23.31 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 |
| InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF182 | SUPFAM:SSF81338 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCSU01G041600 | EnsemblPlants:TraesCSU01G041600.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:34134548..34135685
Molecular Weight (calculated)
29865.8 Da
IEP (calculated)
9.261
GRAVY (calculated)
0.594
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDKTNTVG GDGAANGPDL EQARRGQESA PAAGHATKGL AVGHLIRELL LEGVATFLMV FWSCVAALMQ EMHHGLTFPT VCLVVALTVA FVLGWMGPAH
101: LNPAVTLTFA AFRYFPWRKL PLYVATQIGA SVLACLSVNA IMRPHDDNFY GTVPRPPEAG ARLPFLLELL ASAVLMIVIS TVATSNASKA VVGIAIGATV
201: GTLGLVIGPV SGGSMNPARS LGPAIVFGRY TSIWIYVVAP VAGMLLGALF NKTVRQSDAI VGFLCGGRGA SSRVVVVGRS VTGAPGTN
101: LNPAVTLTFA AFRYFPWRKL PLYVATQIGA SVLACLSVNA IMRPHDDNFY GTVPRPPEAG ARLPFLLELL ASAVLMIVIS TVATSNASKA VVGIAIGATV
201: GTLGLVIGPV SGGSMNPARS LGPAIVFGRY TSIWIYVVAP VAGMLLGALF NKTVRQSDAI VGFLCGGRGA SSRVVVVGRS VTGAPGTN
001: MSSHSDEIEE EQISRIEKGK GKDCQGGIET VICTSPSIVC LTQKLIAEMI GTYFIVFSGC GVVVVNVLYG GTITFPGICV TWGLIVMVMI YSTGHISGAH
101: FNPAVTVTFA IFRRFPWHQV PLYIGAQFAG SLLASLTLRL MFKVTPEAFF GTTPADSPAR ALVAEIIISF LLMFVISGVA TDNRAVGELA GIAVGMTIMV
201: NVFVAGPISG ASMNPARSLG PALVMGVYKH IWVYIVGPVL GVISGGFVYN LIRFTDKPLR ELTKSASFLR AVSPSHKGSS SKT
101: FNPAVTVTFA IFRRFPWHQV PLYIGAQFAG SLLASLTLRL MFKVTPEAFF GTTPADSPAR ALVAEIIISF LLMFVISGVA TDNRAVGELA GIAVGMTIMV
201: NVFVAGPISG ASMNPARSLG PALVMGVYKH IWVYIVGPVL GVISGGFVYN LIRFTDKPLR ELTKSASFLR AVSPSHKGSS SKT
Arabidopsis Description
NIP4-1Putative aquaporin NIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIZ9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.