CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12738	Canola	cytosol	94.62	97.96
CDY12077	Canola	cytosol	90.55	93.62
CDX90271	Canola	cytosol	90.55	93.5
Bra032766.1-P	Field mustard	cytosol	91.6	90.41
AT4G14160.1	Thale cress	cytosol	82.55	81.37
VIT_05s0062g00130.t01	Wine grape	cytosol	77.82	76.91
CDX86574	Canola	cytosol	76.9	76.4
CDY15544	Canola	cytosol	76.9	76.4
KRG97365	Soybean	cytosol, endoplasmic reticulum, nucleus	76.51	76.11
Os11t0433500-01	Rice	cytosol, plasma membrane	34.65	75.21
KRH31551	Soybean	endoplasmic reticulum	75.46	74.97
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	62.6	72.94
Solyc05g053830.2.1	Tomato	cytosol, nucleus, plastid	73.49	71.43
PGSC0003DMT400040714	Potato	cytosol	73.49	71.43
GSMUA_Achr9P30270_001	Banana	plastid	65.22	70.5
PGSC0003DMT400080958	Potato	cytosol	70.6	70.42
Solyc09g092680.2.1	Tomato	cytosol	70.34	69.97
GSMUA_Achr1P25630_001	Banana	plastid	66.67	68.83
GSMUA_Achr8P33210_001	Banana	cytosol	66.14	68.76
GSMUA_Achr11P...	Banana	cytosol	19.42	67.58
Zm00001d049155_P004	Maize	plastid	69.69	67.13
OQU83385	Sorghum	cytosol, plastid	69.82	67.09
TraesCS4D01G151400.1	Wheat	golgi	68.24	66.5
TraesCS4B01G163100.3	Wheat	plastid	68.24	66.5
CDY64015	Canola	cytosol	12.07	66.19
TraesCS4A01G151800.3	Wheat	cytosol, plastid	67.98	65.9
HORVU4Hr1G041690.2	Barley	cytosol, nucleus	68.24	62.73
CDY12241	Canola	cytosol	45.67	57.24
CDY13800	Canola	cytosol	54.86	55.44
Zm00001d004640_P001	Maize	cytosol, plastid	35.96	54.47
Zm00001d004639_P001	Maize	plastid	28.87	53.01
CDY22339	Canola	cytosol	43.96	45.27
CDX94717	Canola	cytosol	43.83	44.41
CDY59754	Canola	cytosol	54.07	43.51
CDY22008	Canola	plastid	15.22	13.27
CDY07119	Canola	plastid	15.09	13.16

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
GO:A0A078EJ72	InterPro:ADF-H/Gelsolin-like_dom_sf	EnsemblPlants:CDY01197	ProteinID:CDY01197	ProteinID:CDY01197.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	EnsemblPlantsGene:GSBRNA2T00111305001	InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf
InterPro:IPR029006	InterPro:IPR036465	PFAM:PF00626	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815
PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995
SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom
InterPro:Sec23_24_beta_S	InterPro:Sec23_C	UniParc:UPI0004EE9489	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

BnaA04g06220D

Coordinates

chrLK031924:+:1066865..1071255

Molecular Weight (calculated)

84161.4 Da

IEP (calculated)

6.169

GRAVY (calculated)

-0.142

Length

762 amino acids

Sequence
(BLAST)

001: MAEMDPEGMD GVRMTWNVWP RTKVEASKCV IPLAASISPI RRHSDIPSLP YAPLKCRTCV SVLNAFARVD FAAKIWICPF CFQRNPFPPH YHMISDTNLP
101: GELYPQYSTV EYALPSTAGQ FDPRTGAAPP LTPPPVFVFA HVHELGFSEM SKVFVFKGNK EVSKDQVLDQ LGLSSRRAPT SGFPKGAQNG LQSAAGVNRF
201: LLPASDCEYT LDLLLDELQT DQWPVQPGHR PQRCTGVALS VAAGLLGACL PGTGARIVAL VGGPCTEGPG TIISKDLSDP VRSHKDLDKD AAPYYKKAVK
301: FYDSIAKQLV AQGHVLDLFA SALDQVGVAE MKVAVESTGG LVVLSESFGH SVFKDSFKRV FEDGEQSLGL CFNGTLEINC SKDIKIQGAI GPCSSLEKKG
401: PSVADTVIGE GNTNAWKLCG LDKSTCLTVF FDLSSTGSNA PGTVNPQFYL QFVTSYQNPE GQTLLRVTTI TRQWVDTAVS TEELVQGFDQ ETAAVVMARL
501: ASFKMETEIK NNPKSDCPLR KRQRLRPCSI FIDEPSFEGF DATRWLDRTL IRLCSKFGDY RKDDPTSFTL NPYFSLFPQF MFNLRRSQFV QVFNNSPDET
601: AYFRMLLNRE NISNATVMIQ PSLTSYTFSS PPQPALLDVA SIAADRILLL DAYFSVVVFH GMTIAQWRNM GYHEQPEHEA FAQLLQAPQE DSQMIVRERF
701: PVPRLVVCDQ HGSQARFLLA KLNPSATYNS ANEMSAGSDV IFTDDVSLQV FFEHLQKLAV QS

Best Arabidopsis Sequence Match ( AT4G14160.2 )
(BLAST)

001: MAEMADKAKV EEMDWEGIDG VRMTWNLWPR TKVEASKCVI PLAASISPIR RHPLILDLPY APLDCKTCKA LLNAFARVDF AAMNWVCPFC YHRNHFPSHY
101: HSISEINLPG ELYPQYTTVE YTLPPDPSRV PPPPVFVFVL DTCMIEEELG YAKSALKQAI GLLPENALVG FVSFGTQAHV HELGFSEMSK VFVFKGNKEV
201: TKDQILDQLG LGSSSRRAPT SGFSKGAQNG FQSSGVDRFL LPASECEYTL DLLLDELQSD QWPVQPGHRP QRCTGVALSV AAGLLGACLP GTGARIVALV
301: GGPCTEGPGT IISKDLSDPV RSHKDLDKDA APYYKKAVKF YDSIAKQLVA QGHVLDLFAS ALDQVGVAEM KVAVESTGGL VVLSESFGHS VFKDSFKRMF
401: EDGEHSLGLC FNGTLEINCS KDIKIQGVIG PCSSLEKKGP NVADTVIGEG NTSAWKLCGL DKSTCLTVFF DLSSTGSTAP GALNQQLYLQ FITRYQNSEG
501: KSLARVTTLT RQWVDTAVST ENLVQGFDQE TAAVVMARLT SLKMETEEGF DATRWLDRTL IRLCSKFGEY RKDDPTSFTL KPYLTLFPQF MFNLRRSQFV
601: QVFNNSPDET AYFRMLLNRE NISNAIVMIQ PSLTSYSFNS GPQAALLDVA SIAADKILLL DAYFSVVVFH GMTISQWRNM GYHHQPEHEA FAQLLQAPQE
701: DSQMLVRERF PVPRLVVCDQ HGSQARFLLA KLNPSATYNN ANEMSAGSDI IFTDDVSLQV FIEHLQKLAV QS

Arabidopsis Description

Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JUM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.